Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1188 ATGCTTAACTCCGATGAAGCAGATACAGAAATATTCTTCGACTCGGCAGATTTTCTGCCATCTCAACACTCTGTTCTAGACGAAGACTTGGGAAGTAACAAGCTTGGGTATGAAGTTTGGGTGAACAAGCCTCAAAGTGTGAAGGAAAGACGGCAACGTTTTTTCCAGGAAATGGGTTTTGCCGACCCTTCTTCAAACGCTTGCTCTCAAGAGATCAACGCCCTGGAACTTGAAAGGATAATGGAGAGCGAAGGCTCAGTATCCAGCTCCTCTACCGAAGCAAACGTCTCGTTTGATGAACACAACGGAGACGTAAACTTTGAAAGGAAGGCGTGCGAGTCATCTTCCGGTGAAGATCACAGACGACCCAGAGAAGCTGAGGCGTCAGAAGAATGTCAACATGGTCCCTTCGATACGGGTAAAAAGAAAATGAAGGGCTGGTGGAAGCTCTTCGTGAAGAGCAGGAAAACAAGTGGAGGGAAAATGCGATCAAAATTGAATAGAGAGATGAGTAAAACTCGTAGAATAAATGTAAAGCAGAACAAGAAGAGGTGGATGGAATTGAGTGCTTTGTATTTAGGACAAGAGATTAGAGCTCATGAAGGCTTAATCTGGTGTATGAAGTTTAGTCCTAATGGGCAGTATGTAGCCAGTGGTGGTGAAGATGGCGTAGTTCGAGTATGGCGTGTTATATCAATCGATACATCCAGCATTTGCTTCAATGCAGAAGACACTACTACTAGCAAAGCGAAACGAGATATCTCTTGTTCATGGAGGAAAAAGTGGAATATATCCTTCATGGCCCTTCCAAACAAGGTTCTTCAAATTGAGGAATCGCCACTGCAAGAATTCTTTGGTCATACCAGTGATGTCTTGGATTTGGCTTGGTCTGATTCAAATATTCTTTTGTCGTCTTCAACGGACAAAACGGTCCGTTTGTGGGAAATTGGTTGTGATCAATGTATGGGTGTCTTCCGTCACAATGACTATGTGACTTGTATCCAAGCCAACCCAGTTGATAAAAACTACTTCATCAGTGGGTCTATAGATGGCAAAGTCCGGATATGGGGGCTATGTGAAGCACGTGTTGTGGATTGGGCAGATGTAAGAGATGTGATTACGGCCGTAAGTTACCAGCCAGATGGGAAGGGGTTTGCAGTTGGATCCATCACAGGCGCTTGCCGTTTTTATGTGGCTTCAGGCAAACATATCCAGCTTGAAGCAGAGATATGGGTTCATGGGAAGAAGAAATCAGCGGGCAATAAGATTACTGGCATTCAGTTTTCACAGAAAAAGCACCAGAGAGTCATGATCACATCAGAAGATTCTAAAATTCGTGTGCTTGATGACTTTGAACTTGTCCAGAAATTTAGAGGCATTCCGAAGTCAGGAAGCCAGATTTGTGGCTCATTTACATCAACCGAAAATCGTATAATTTCTGTTGGAGAGGATTCCAATGTGTACATTTGGAATTGTAATGACTTGGAAAATTCATCATCCAAACCCATAAAATCCGAGCGTTGCTGCGAGTACTTTTCCACTGAAGGCGTTACTGTGGCAATACCCTGGTTGGTAAATAGCACGGAACAAACGAGCTTATCTGGTAATAATTCACTCCAAGAGGCTCGTCCTAGTGTTAGAGATTCAGAGCGTTTCTCTCTCGGTAATTGGTTCTCCATGGAAGGGACGTGCCGGGGTTCGGTGACGTGGCCGGAAGAGAAACTTCCAAGCTGGAATATACCATTTACAGAAGATGAATATGATCCCGTAGAGCTGTGCCATGAAAGAGGTGGATCAGAGACATGGGGATTATCCTTTGTGGTAGCTGGTTTGGATGGAACTATCAAGACATTTCGTAACTTTGGATTGCCTGTTAGGCTTTAG 1884 0.44 MLNSDEADTEIFFDSADFLPSQHSVLDEDLGSNKLGYEVWVNKPQSVKERRQRFFQEMGFADPSSNACSQEINALELERIMESEGSVSSSSTEANVSFDEHNGDVNFERKACESSSGEDHRRPREAEASEECQHGPFDTGKKKMKGWWKLFVKSRKTSGGKMRSKLNREMSKTRRINVKQNKKRWMELSALYLGQEIRAHEGLIWCMKFSPNGQYVASGGEDGVVRVWRVISIDTSSICFNAEDTTTSKAKRDISCSWRKKWNISFMALPNKVLQIEESPLQEFFGHTSDVLDLAWSDSNILLSSSTDKTVRLWEIGCDQCMGVFRHNDYVTCIQANPVDKNYFISGSIDGKVRIWGLCEARVVDWADVRDVITAVSYQPDGKGFAVGSITGACRFYVASGKHIQLEAEIWVHGKKKSAGNKITGIQFSQKKHQRVMITSEDSKIRVLDDFELVQKFRGIPKSGSQICGSFTSTENRIISVGEDSNVYIWNCNDLENSSSKPIKSERCCEYFSTEGVTVAIPWLVNSTEQTSLSGNNSLQEARPSVRDSERFSLGNWFSMEGTCRGSVTWPEEKLPSWNIPFTEDEYDPVELCHERGGSETWGLSFVVAGLDGTIKTFRNFGLPVRL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1188 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 316 IPR001680 GO:0005515
Lele20g1188 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 358 IPR001680 GO:0005515
Lele20g1188 627 ProSitePatterns Trp-Asp (WD) repeats signature. 302 316 IPR019775 -
Lele20g1188 627 PRINTS G protein beta WD-40 repeat signature 216 230 IPR020472 -
Lele20g1188 627 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Lele20g1188 627 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Lele20g1188 627 SUPERFAMILY WD40 repeat-like 192 494 IPR036322 GO:0005515
Lele20g1188 627 Pfam WD domain, G-beta repeat 196 228 IPR001680 GO:0005515
Lele20g1188 627 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Lele20g1188 627 Pfam WD domain, G-beta repeat 320 356 IPR001680 GO:0005515
Lele20g1188 627 SMART WD40_4 450 491 IPR001680 GO:0005515
Lele20g1188 627 SMART WD40_4 318 357 IPR001680 GO:0005515
Lele20g1188 627 SMART WD40_4 277 315 IPR001680 GO:0005515
Lele20g1188 627 SMART WD40_4 190 229 IPR001680 GO:0005515
Lele20g1188 627 SMART WD40_4 360 398 IPR001680 GO:0005515
Lele20g1188 627 SMART WD40_4 403 449 IPR001680 GO:0005515
Lele20g1188 627 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 230 IPR001680 GO:0005515
Lele20g1188 627 MobiDBLite consensus disorder prediction 107 138 - -
Lele20g1188 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 316 - -
Lele20g1188 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 230 - -
Lele20g1188 627 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 358 - -
Lele20g1188 627 PANTHER WD REPEAT DOMAIN 44 137 624 IPR040324 -
Lele20g1188 627 Gene3D - 181 521 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1188 Lele-ChrLele20 16993879 16996332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1188 281 449 U-box Gene Family AT2G33340 26.816 3.51e-07 51.2