Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1181 ATGGGTGGAAGTGGCAGAAGGCGTTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTACCTGACGGTGAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCAAAATGGTCTTATTTGGATGGGAATGAGAAGCTAAAACCTAATCTGCGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGAATATAATAGAGATTTGGATGCCAAAATGGCATGGAACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCAAAAAATGGTTTGGACAAGAGTAGAAGCCGGAGCCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCACCACCATGTAGAGATTTTGCTGTTGGGAAATGCAGAAGAGGTAGCCGTTGCCATTTTCTTCACCATGACGATCGGAATTATGAGGATGGCTGGGACAGTAGAAATAGGAAAGATGGACCTCCCAGATATTGTGCTCCCTATGAAAGCAGGGATTATTCTCCTAGGAGTGGAAGATCAAATGAGACTTGTATCAATTTTGCACAAGGCAAATGTAGAATGGGAGCATCTTGCAAATACGGGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTACATGATTCATCTAGAGAGAGGGAATTTGATCAAAGGCGCCGGGAGAGTTCTTTCGAGCGTGGTGGTGGGCATGAGCCAAACCACTTTAGTGATACTCCCTGCAAATTTTACGCAGCCGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCACGATATTCAGGCATCTAGGAGCCCAGATAGAAGATTAAGAGATGACAGGTGGGGGAACAATCCAGGCAGAGATCGTGCATTGGATAGACCAAGAGGGAGTAACTCAGTTAGTCCTAGTAGAAGGCCAAGAGATGATAGATGGGGTCCAGATGGCAACATGGTTGACATGGATAAAATGTGGGATGGTCCAAAACTGCATGATGCTGTTGCTGTCTCGGATACAGCAAAGCTGAGTGAAGATAAGAGTGGAAATATGGGCATACCAGAACCTGGCTTTACTACTTGGCCCAGGACTGATGGATGGGGCGATAATTTAGATGACAACGAAGTGTATGCTGAGCCACCATTTGTGGGTGACAAGAAGAAAGCAGAGCAATGGAAGACAGAAAATGCTGGTGCTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAATGGCTCGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGTGGATCTTCTGGGCATATTGAAGACAAGAGTGTGCAGAATAAGCATGGTTTGACCCAGGGTGGTGCATATTTAGCCACCTCCGAACATCACAGATTACAAGTTGCTCCAGGACAAGTTTTTAATCAGAACTCACAGAATGCAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGTTGGACAAAGTCAAGGGGCAGTCCCTGTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACAAAGCATCTTCTGCCAAAAAGTACAGTGTTGAGCCAAATATCATGGATGCAAGCTTATCGCATGTTAGCACAATAAATACTCCAACTCAACACATGGTGAGCAATGATCAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCTCTAAATTCTCATGATGTGAAGGACATGTCCTCCCTAGCCAAAACTGAAGTGTCTGGGGAGGGTGTTTCCAGTGCATACATCAAGCCAGATCCTGTTATTGGATCCCAGAAGCAGTATGATCCAATGAGTGATAGTATGGAGCCAAAGAAGACTGATGCAGAGCCAGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGTGAGACAAAATCTTGGTGATTCTCGTAAGGCTTCAGAAGAACAAATTGCCAAGAGTGAACATTTAAACCCTTTGCAGTCAGGTCAAAAAGTTGAAGCTAATAAGGGAAACAATGAAGTGGCAGCTGAGGAAAGGCTAGATTCCCGAGCAGATGATAGAAATGCAAAAGATAATGGTCCTTCAGAAAATATGGACCAAAATGGGTCTGATGAGTCGAAGAAAACGAAGGACGTGAAGGGGATTCGTGCTTTTAAATTTGCACTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGATGGTCACATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGTCACAAGAAAAAATTGATCACTATTTGTCAGTTTCGAAACCAAAGCTTAACAAGCTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2496 0.4367 MGGSGRRRSSKWDLRDEPEFVPDGEQLRSGWSSANVTGSNSSKWSYLDGNEKLKPNLRLPFKEPFSGGRVSNKDDIMNKEYNRDLDAKMAWNADESYGMKMSPGLEEWKRKRRSHSPKNGLDKSRSRSRSPAHGFRWESGVNDRNRMRAGGLPPPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRNRKDGPPRYCAPYESRDYSPRSGRSNETCINFAQGKCRMGASCKYGHHSNSDDMSKGNVHDSSREREFDQRRRESSFERGGGHEPNHFSDTPCKFYAAGNCRNGKYCRFSHDIQASRSPDRRLRDDRWGNNPGRDRALDRPRGSNSVSPSRRPRDDRWGPDGNMVDMDKMWDGPKLHDAVAVSDTAKLSEDKSGNMGIPEPGFTTWPRTDGWGDNLDDNEVYAEPPFVGDKKKAEQWKTENAGATMGAPQSIGTDKWLVDAEMSPDWNYGSGSSGHIEDKSVQNKHGLTQGGAYLATSEHHRLQVAPGQVFNQNSQNANALRPSSCNVVGQSQGAVPVVPPLGGIAEVIQNKASSAKKYSVEPNIMDASLSHVSTINTPTQHMVSNDQLAQLSSLSASLVHFLGTGQQLPQIYAALNSHDVKDMSSLAKTEVSGEGVSSAYIKPDPVIGSQKQYDPMSDSMEPKKTDAEPAFSPSKTIADSSVRQNLGDSRKASEEQIAKSEHLNPLQSGQKVEANKGNNEVAAEERLDSRADDRNAKDNGPSENMDQNGSDESKKTKDVKGIRAFKFALVEFVKELLKPTWKDGHINKEHYKTIVKKVVDKVTGTMQGAHIPQSQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1181 831 ProSiteProfiles Zinc finger C3H1-type profile. 210 238 IPR000571 GO:0046872
Lele20g1181 831 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 830 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 336 351 - -
Lele20g1181 831 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 175 IPR000571 GO:0046872
Lele20g1181 831 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Lele20g1181 831 MobiDBLite consensus disorder prediction 28 46 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 8 23 - -
Lele20g1181 831 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Lele20g1181 831 MobiDBLite consensus disorder prediction 622 745 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 302 351 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 106 152 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 373 394 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 181 197 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 106 132 - -
Lele20g1181 831 Gene3D - 153 240 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 302 328 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 706 728 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 236 272 - -
Lele20g1181 831 SUPERFAMILY CCCH zinc finger 276 299 IPR036855 GO:0046872
Lele20g1181 831 ProSiteProfiles Zinc finger C3H1-type profile. 275 301 IPR000571 GO:0046872
Lele20g1181 831 MobiDBLite consensus disorder prediction 1 46 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 235 276 - -
Lele20g1181 831 Pfam RNA-binding, Nab2-type zinc finger 216 234 - -
Lele20g1181 831 SMART c3hfinal6 150 176 IPR000571 GO:0046872
Lele20g1181 831 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Lele20g1181 831 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Lele20g1181 831 MobiDBLite consensus disorder prediction 688 703 - -
Lele20g1181 831 MobiDBLite consensus disorder prediction 181 204 - -
Lele20g1181 831 Gene3D - 273 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1181 Lele-ChrLele20 16957360 16961614 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele20g1181 zf-CCCH 0.00027 CL0537