Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1175 ATGATGCCGGGATTTCGATTTCATACGACTGACGTTGAGCTGGTTCAGTACTTTCTGAAGAGGAAGGCCATCGGGAAAAAGTTTCCCGTTGAAGTGATTGCCGAAGTCGACATATACAAATACGCTCCATGGGATCTCCCAGATAAATCTTTAATGAGCAGGGAGGATTTGGAATGTTATGTCTTTTGCCCTAGAGCAAAGAAATATGGCATTGGAAGTAGAATGATGAATAGGAGTACTGTTTCATCACATGGTGAAGGACGTCGAACTGGCAGGGTTATGCATGAATTTAGGCTTCTCGCTGACAAAGACGACACCGCGCAGGAGGACTCGTATGTGATTTGTAGTGTGTTCAAGACGGATGGGCGTGGTCGTAGGAATGGTGGACAATATGGTAACCTGTTTGACGAGGAAAACTGGGATGATGATGAGGAGGAAGATAAAAATGATGATGATAACTCAAGGTCAAGTTTGTCATCAGGAGCGCATCATGCTTCAATTGTGAATACAGATGATGTTTCTCAATTTGCATTTGGTGATGACGATGATGTGTCATGCTCGTTTTGGATTGTTTCACAGAAGAAGAATACAACTTTTGGGGACTTGGCTGCACTGGATGAAGATTACACTGCTGATCTCTCCTTCTGA 648 0.4352 MMPGFRFHTTDVELVQYFLKRKAIGKKFPVEVIAEVDIYKYAPWDLPDKSLMSREDLECYVFCPRAKKYGIGSRMMNRSTVSSHGEGRRTGRVMHEFRLLADKDDTAQEDSYVICSVFKTDGRGRRNGGQYGNLFDEENWDDDEEEDKNDDDNSRSSLSSGAHHASIVNTDDVSQFAFGDDDDVSCSFWIVSQKKNTTFGDLAALDEDYTADLSF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1175 215 ProSiteProfiles NAC domain profile. 1 161 IPR003441 GO:0003677|GO:0006355
Lele20g1175 215 Pfam No apical meristem (NAM) protein 3 87 IPR003441 GO:0003677|GO:0006355
Lele20g1175 215 SUPERFAMILY NAC domain 2 120 IPR036093 GO:0003677|GO:0006355
Lele20g1175 215 MobiDBLite consensus disorder prediction 136 150 - -
Lele20g1175 215 MobiDBLite consensus disorder prediction 128 163 - -
Lele20g1175 215 Gene3D NAC domain 10 85 IPR036093 GO:0003677|GO:0006355
Lele20g1175 215 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1175 Lele-ChrLele20 16924811 16925978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1175 1 165 NAC Transcription Factor Family AT5G64060 44.828 4.60e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele20g1175 NAM 1.6e-15 No_clan