Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1172 ATGCTCTCTCGGAGTTCACCCAGAACCAGCAGGGATTTTACTCTTACCGGTGCTGCTCCCGTTGGTGGATCGTCCTCGGGATTTTCTTGTTTCGATTCTGATGGCGGCGGCGAGAAGATAGGCCTTCCTTTGCCTCGACCATCGATTTCGTCCCCGCAGAGCTTTGGGAACGATCAAGGAGATGGAGATGGCTTGGGATCTGCGTCGATCTCTGGTTCAAGCGTGAGTTCTTCTGGGTCCGACGATCATCATCCAATCTCTCAATTTGATGGCATCAGGGGACGAGGTGATATGAAGATTAATATGAGGTCAAAAAGCCCTGGTCCTGGACCCACCAGCCCGACTTCACCCCTCCATCCAAGATTGCATGTTCTAAGTATTGACTCTCCTACAGGCAAACAAGATGATGGAAGGAGTGAGTGTCATCCATTGCCTCTACCACCAGGTTCACCGACTAGCCCTTCTGCTCTCTCCAATGCAAGAACTAATGGTCTTTTAGAAAACACCAACAATCTGTCCAAGTGGAAGAAAGGAAAGCTTTTAGGAAGAGGGACGTTTGGTCATGTGTACCTGGGATTTAATAGTGAAAGTGGACAAATGTGTGCAATAAAAGAAGTCAGAGTTTTCTCTGATGATCAAACATCGAAAGAGTGCCTCAAACAACTTAACCAGGAGATGGATCTGCTCAGTTCACTTTCACATCCTAACATTGTTGAATACTATGGGAGTGAGCTGGGAGAAGACACACTTTCTGTTTATTTAGAATATGTCTCTGGTGGTTCCATCCATAAACTACTTCAGGAATATGGTCCATTTAAGGAACGTGTTATTCAGAACTATGTTAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAACACAGTGCACAGGGATATCAAAGGGGCAAACATACTAGTTGATCCTAATGGCGAAATTAAGTTGGCGGACTTTGGAATGGCTAAACATATAAATTCTTCTACCTCCATGCTTTCTTTCAAGGGAAGTCCATATTGGATGGCACCCGAGGTTGTTATGAATACAAATGGTTACAACCTTGCCGTGGATATATGGAGCTTGGGATGCACAATTCTGGAAATGGCAACATCAAAACCTCCATGGAGTCAGTATGAAGGGGTAGCTGCTATATTTAAAATTGGGAACAGCAAAGACATGCCTGAAATCCCTGAGTATCTTTCAAATGATGCCAAGTCTTTCATACAGCTATGCTTACAAAGAGACCCGTCAGCTCGCCCAACTGCTCAAAGGTTGCTAGAGCATCCCTTTATTCGTGATCAATCTGCGACAAGAGCTGCCAATGTCAGCTTAACCAGAGATGCTTTTCCCTACATGTTTGATGGAAGCCGGACGCCGGTACATGTAGAGCTTCATTCCAGTAGAACAAATATGACTTCAGTGGATGGAGATTATGCAACAAAGCCAACTTTTGCAGCTTCACGAGCATTAAGGAGCCCAAGAGATAATGCAAGAATGATTACATCTTTACCGGTATCCCCCTGCTCAAGTCCATTGCGGCAATATGGATCAGCATACAAGAGCTGTATGCTTTCTCCTCCACATCCAACTTACAATCCTCCGGTGGGACAAAATACCTACAATTTTAGCGATCTCTCTTCACATCCAGTGAGATCAAACGCCACCTTCACTTTGGATCCTTGGAATGAGAGATCTCTATATAACGCCCACACACCACCTGGTGGGTCCCCAAGAAGAAGACTCATTTGA 1749 0.4517 MLSRSSPRTSRDFTLTGAAPVGGSSSGFSCFDSDGGGEKIGLPLPRPSISSPQSFGNDQGDGDGLGSASISGSSVSSSGSDDHHPISQFDGIRGRGDMKINMRSKSPGPGPTSPTSPLHPRLHVLSIDSPTGKQDDGRSECHPLPLPPGSPTSPSALSNARTNGLLENTNNLSKWKKGKLLGRGTFGHVYLGFNSESGQMCAIKEVRVFSDDQTSKECLKQLNQEMDLLSSLSHPNIVEYYGSELGEDTLSVYLEYVSGGSIHKLLQEYGPFKERVIQNYVRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSTSMLSFKGSPYWMAPEVVMNTNGYNLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEYLSNDAKSFIQLCLQRDPSARPTAQRLLEHPFIRDQSATRAANVSLTRDAFPYMFDGSRTPVHVELHSSRTNMTSVDGDYATKPTFAASRALRSPRDNARMITSLPVSPCSSPLRQYGSAYKSCMLSPPHPTYNPPVGQNTYNFSDLSSHPVRSNATFTLDPWNERSLYNAHTPPGGSPRRRLI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1172 582 ProSiteProfiles Protein kinase domain profile. 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1172 582 CDD STKc_MEKK1_plant 174 431 - -
Lele20g1172 582 MobiDBLite consensus disorder prediction 1 161 - -
Lele20g1172 582 Gene3D Transferase(Phosphotransferase) domain 1 172 452 - -
Lele20g1172 582 MobiDBLite consensus disorder prediction 1 31 - -
Lele20g1172 582 MobiDBLite consensus disorder prediction 47 84 - -
Lele20g1172 582 MobiDBLite consensus disorder prediction 86 100 - -
Lele20g1172 582 SMART serkin_6 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1172 582 Pfam Protein kinase domain 176 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1172 582 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lele20g1172 582 FunFam Mitogen-activated protein kinase kinase kinase 173 455 - -
Lele20g1172 582 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 97 440 - -
Lele20g1172 582 SUPERFAMILY Protein kinase-like (PK-like) 172 499 IPR011009 -
Lele20g1172 582 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1172 Lele-ChrLele20 16899588 16904284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1172 6 494 MAP Kinase Kinase Kinase AT1G53570 61.584 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele20g1172 Pkinase 2.8e-74 CL0016