Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1167 ATGCTAGTCGTGGGGTACGAGTTTAAGGGAATTAGAATGTCCAGAAGCAGTGGCAGTGAGAATAAGAGCTGTAACAGAGGCCATTGGAGACCAGCTGAAGATGAGAGACTGAAACAGCTTGTGGAGCAGTACGGTCCCCAGAACTGGAATTTCATTGCAGAACATCTTGAAGGGAGATCAGGGAAAAGTTGCAGATTGAGGTGGTACAACCAACTAGACCCAAACATAGTGAAAAGGCCATTCACAGAGGAGGAGGAAGAAATACTGCTAGCTCTTCACAAGGCAAAGGGAAACAAATGGGCTGCAATTTCCAGGTTCTTGCCTGGAAGAACTGATAATGCTGTGAAGAATCACTTCCATGTCCTTATGGCAAGAAGAAAGAGAGAACGTTACTCACTCTTCGGTGACAGAAGCAGTAATCATAATCATATTCCTATACATAGGCCTACCTCAGGGATAATTAATAACTTCACCTTCCAAAATAACAGCAACTACTTGGGACTGAATCCTTGGAATACTCGAAGTGATACTTCTATTTCGACCGTCTCATCAGAGTTACTGAGTTTTGAAGCTTCTGGGGGTGCTTCTTGTTCGCTTGGCAGTTATAGCAGTTTCACTGCCCCAGGAGTTCCCAGCATTGGTAAGGTCGTCCCTCTTCTTCCTCAGAGGTTCTCAAAATCCTATTTTGCCCAAAGAACTGAGGAATATTCTTCCATCAAAGGCATGACAGACAAGATTATTCTGGAAGAACAAGTTGAAAAACTTAAGGATGTTTCCTTTATAGACTTTCTTGGCGTGGGGAGTTGTTCTGCCAGCGACAGTTGA 825 0.4388 MLVVGYEFKGIRMSRSSGSENKSCNRGHWRPAEDERLKQLVEQYGPQNWNFIAEHLEGRSGKSCRLRWYNQLDPNIVKRPFTEEEEEILLALHKAKGNKWAAISRFLPGRTDNAVKNHFHVLMARRKRERYSLFGDRSSNHNHIPIHRPTSGIINNFTFQNNSNYLGLNPWNTRSDTSISTVSSELLSFEASGGASCSLGSYSSFTAPGVPSIGKVVPLLPQRFSKSYFAQRTEEYSSIKGMTDKIILEEQVEKLKDVSFIDFLGVGSCSASDS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1167 274 CDD SANT 29 70 IPR001005 -
Lele20g1167 274 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
Lele20g1167 274 PANTHER MYB PROTEIN-RELATED 26 169 - -
Lele20g1167 274 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Lele20g1167 274 SMART sant 25 74 IPR001005 -
Lele20g1167 274 SMART sant 77 125 IPR001005 -
Lele20g1167 274 Gene3D - 26 77 - -
Lele20g1167 274 Pfam Myb-like DNA-binding domain 26 72 IPR001005 -
Lele20g1167 274 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Lele20g1167 274 Gene3D - 79 144 - -
Lele20g1167 274 FunFam MYB transcription factor 26 77 - -
Lele20g1167 274 ProSiteProfiles Myb-like domain profile. 21 72 IPR001005 -
Lele20g1167 274 CDD SANT 88 123 IPR001005 -
Lele20g1167 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Lele20g1167 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1167 Lele-ChrLele20 16878319 16881325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1167 11 270 MYB Transcription Factor Family AT4G33450 46.739 5.73e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele20g1167 Myb_DNA-binding 4.5e-16 CL0123