Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1163 ATGACGATTCCTCACTTGTTCAGATGCCCAATCAGTCTCGACTTGTTTGAGGATCCTGTAACGTTATGCACTGGCCAAACCTACGATAGGTCGAGCATAGAAAGATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTTACAATGCAGAAGCTTCATGATTTATCCATCGTCCCCAATCACACTCTTCGTCATTTGATAGATCACTGGCTTCAATTCTACCCTCAATTTGATCATTCTGGTAACTCTAAAACCATTGATTCTCTTGCCTCTCTGAAACGCACCCTTCAATCTCAGGAATCCACCTTCCAGAACAAACTCCAAGCACTTGAAAAGATCAAGCTTTTATCTGATGAGTATTGCTCTTTCAAGAAATCTTGCTTCCTCCAACTGAGTTTCTTGCCTCTTCTTTTGGAACTAGTTTTTGAAGCTCAAATGTCCAAAGAGAACCACGATCACAACAACATGGAGTTCATAGAGCTAGCTCTTTCTTGCATTATAAAGTTGTTACCTCTTGACAGTACCTTAGAGCCTCTAAATATTCTCAAAGAAGAACCTAAACTAGAATCGTATCTTCTATTATTCGAGAAGGGAAGTCCTACTATTAAAACCAGTCTGTGTAATCTGATAGATTCAGCAGCAACAGCACATTTAGAAGAGGTTTTGCTTATGCTTGGAAACTCCCAGAAACTGCTCAGTGAAATTGTTCGTCTTGTAAGCCAAAATAACTGTGAGGCTTCAAGGGTTGCAATTAAAGCCATATCAGCGTTATGTTCATTGCAATCAAACAGAGAGAATCTGGTAAAAGCAGGGGCGATTGATGGAATCGTGAGGTACATTTCAGGATGTGAAACAAGAGAGAATAACTTGGCTCCATTGGGGATGGAGATAATAGAGAAGCTTCTTGTAATAGAGAGAGGCAAAGAAGCATTAGTGAACAGTCAAAATGGGATTCAAACTTTGGTGAAGACGGTGTTCAGAGTGAGTAATCAAGAGTGTAGTGAGAATGCTGTGGGGCTTCTGATAATGGTGTGCAGAGAAAGTGGGAGAGCCAGAGAAGAAGCAATTGAAGAAGGAGTTCTGACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAGTGCTAAGACGAAGACGAAGGCAAGAATGCTTCTCAAATTGCTAAGATCCAAGTGGGCTGAGAGAGTACCAAAACAGGCCTGA 1197 0.4152 MTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIERWLAQGNLTCPVTMQKLHDLSIVPNHTLRHLIDHWLQFYPQFDHSGNSKTIDSLASLKRTLQSQESTFQNKLQALEKIKLLSDEYCSFKKSCFLQLSFLPLLLELVFEAQMSKENHDHNNMEFIELALSCIIKLLPLDSTLEPLNILKEEPKLESYLLLFEKGSPTIKTSLCNLIDSAATAHLEEVLLMLGNSQKLLSEIVRLVSQNNCEASRVAIKAISALCSLQSNRENLVKAGAIDGIVRYISGCETRENNLAPLGMEIIEKLLVIERGKEALVNSQNGIQTLVKTVFRVSNQECSENAVGLLIMVCRESGRAREEAIEEGVLTQLLLLLQSQCSAKTKTKARMLLKLLRSKWAERVPKQA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1163 398 SUPERFAMILY RING/U-box 2 71 - -
Lele20g1163 398 SUPERFAMILY ARM repeat 218 386 IPR016024 -
Lele20g1163 398 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Lele20g1163 398 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
Lele20g1163 398 CDD RING-Ubox_PUB 7 49 IPR045210 -
Lele20g1163 398 FunFam RING-type E3 ubiquitin transferase 3 74 - -
Lele20g1163 398 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Lele20g1163 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Lele20g1163 398 Gene3D - 72 394 IPR011989 -
Lele20g1163 398 PANTHER WDSAM1 PROTEIN 2 392 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1163 Lele-ChrLele20 16856933 16858129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1163 3 392 U-box Gene Family AT3G19380 30.713 2.39e-46 162