Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1157 ATGGCTTCTGGTAAATATTCCAGATTAGACAGTAAAAGAACATCATCAAGTTACTGGTCAACAGTAACTGTTGTTACGTTTGTGGGACTATGCTTGGTTGGAGTTTGGATGATGACATCATCCTCTGTAGTTCCTGTTCAAAATGCTGACGTGTCTCAAGAGAATAAGAATGAAGTAAAGGAAATGACTGAGTTTGAAAAACAGGTGAATGACATCAGCAAGGGCAATTCTCAGCAATTCCGAGATGATCAAGGTGATTTGCCTGTGGATACAACCATGGTTGAAAGTAATGTCCCTAAAAGCAATTCTAATGTCCCAGAATACACAGACAACATCAAAGAAAAGAAATCTGATTCCTATCTGGATGAGAAGAAATCTTATTCCAACGGCAATCTATTAGATGGTCCAAGTGAAACAACTGATAGTAAGATAGAAGAGAAGGTAGAACAAAGGGCTATCAGTGACTCAGATGAAAGCTCTAGTGAGAAGGAAACAGATGATAATGTGCCGAACCGGAGTTCAAAGGCGGTTTATCCTTCTGGAGCACAGTCAGAGGTTCTGAAAGAAAGTAAGACTCGAATTGGTTCCTTTTCAACTCAGGCGTCAGAGTCAAAGAGTGAAAAAGAGTCTCAAAATTTATCTAAGCAGCCTTCTGGTCAATACAATTGGAAACTTTGCAATGTTACTGCTGGTCCTGATTTCATCCCATGCCTTGACAACTGGCAAGCTATTAGGAGTCTCCGGACTACTAAGCACTACGAACACCGAGAAAGACATTGTGCTGCAGAAGCTCCTACCTGCCTTGTTCCTCTTCCTAAAGAATATAGAACTCCGATTGAGTGGCCTAGAAGCAGAGATAAGATATGGTATCACAATGTTCCACACACTATGCTCGCTCAATACAAGGGGCACCAGAATTGGGTAAAAATGTCTGGCGAGTACCTTACTTTTCCTGGTGGTGGAACTCAGTTCCAGCACGGGGCGCTTCATTACATTGACTTTATACAACAGTCTGTTCCTGAAGTTGAGTGGGGCAAACAGACACGTGTGGTATTAGATGTTGGATGTGGCGTTGCCAGCTTTGGAGGCTTTCTCTTTGAGAGGGATGTACTCACTATGTCATTTGCACCGAAGGACGAACACGAAGCTCAGGTCCAATTTGCACTTGAAAGAGGAATTCCTGCTATATCAGCTGTCATGGGCACAAAGAGGCTTCCCTTCCCAGGGAAAGTATTTGACGCTATCCATTGCGCACGCTGTAGAGTTCCATGGCATATAGAAGGTGGTAAGCTTCTCTTGGAGCTGAATCGAGTTTTGCGACCTGGTGGTTTGTTTTTGTGGTCTGCTACTCCTGTTTATCAGAAGGAAGAAGAAGATGTTGAAATATGGGAAGCCATGAAAGTGCTAACAAAAGGAATGTGCTGGGAAGTGGTGTCAATCCAAAGGGATAGACTGAATAAAGTGGGTATAGCTATTTACAGGAAGCCAACATCTAATAAGTGCTACATGAAACGTTCAGTGAATGAGCCCAGTCTCTGCCCTGACTTTGATGATCCTAATGCAGCATGGAACGTTCCATTACAAACTTGCATGCACGAAGCGCCCGAGAATTCAACTGAGCGTGCATATAAATGGCCAGAGGAATGGCCAGCAAGACTGTCCAAACCACCATACTGGTTGTTGAGTTCCCACGTTGGAGTTTATGGAAAGCCTGCCCCTGAAGATTTTACAGCTGATTATGAAAACTGGAAAAACGTAGTATCTGGGTCTTATCTAAATGGGATTGGAGTTGATTGGTCAAAAGTTAGGAATGTGATGGATATGAGATCTGTTTATGGAGGTTTTGCTGCAGCTTTGAGGGATTTAGACGTTTGGGTCATGAACGTGGTTTCAATAGACGCAGCTGACACTCTTCCTATTATTTACGAACGTGGCCTGTTTGGAATATATCATGATTGGTGCGAATCACTCAGCACTTATCCTAGGAGTTATGATCTCCTCCATGCCAATAATCTGTTTTCCAAGCTCAAGAAGAGTTGCAATTTGACAGGCGTAGTTGCTGAGGTTGATCGGATTCTGAGGCCAGGTGGAAAGTTTCTTGTGCGCGACAAATCTGACATGATTAAGGAAATTAAAGGGATGGTGACGTCTTTGCATTGGAAAATTCTCACGAGTTATTCTAACGATAAGAATGGATTTCTATGCGCCCAGAAGTCTACTTGGAGGCCTAAGAAGAAGGAGACACTCGTGTATGCTCTTGCTCTTAGTAAAGATCTTCAACGTGATCAAGATATCGATAAGATCATTCAACGTACTTTGGATTTGGTTACTGATGTGGTTATTGTAACCAATAATATTAAGCTTCATACAATACCACTCAATCTCTCTAAGATCATGGAAGATGAGAGCTACAACAATTTGCCAAATGGGGTCATTACAGAAAGCCCTGAAAGTCCCACCTTAAAGACATCAAGCAACAACAAAGAACAAGATCGCTTTCTCCCCATAGCCAATGTGGGAAGAATCATGAAGAAAGTGATGCCTCCGAATGGGAAAATCTCAAAGGACGCTAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGCTTCGTCACTGGGGAAGCCTCTGATAAATGCCAGAGAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCAATCACAACCCTAGGGTTTGAGGATTACGTGGAACCTTTAAAATGTTACCTTCAGAAGTATAGAGACATAGAAGGAGAGAAGCTTAATATTCCAAAACACCAACGTTCTGAACAAAGGCTTCATCACCAACACCACGACCCAAACCAAACTAGCAGTAGTAATAATAATAATTTACATTTAAGTAGTGTATATTCTTCAACAAACCTAATTTCTCAGCCTCCCTATGTGCCTGCTGGCCAGCCATATGCTCTACCTTTCTCCCCAAATTCTATCAACCAGGACCAGATTGATTCAGTGGGACACTGGTAA 2997 0.4234 MASGKYSRLDSKRTSSSYWSTVTVVTFVGLCLVGVWMMTSSSVVPVQNADVSQENKNEVKEMTEFEKQVNDISKGNSQQFRDDQGDLPVDTTMVESNVPKSNSNVPEYTDNIKEKKSDSYLDEKKSYSNGNLLDGPSETTDSKIEEKVEQRAISDSDESSSEKETDDNVPNRSSKAVYPSGAQSEVLKESKTRIGSFSTQASESKSEKESQNLSKQPSGQYNWKLCNVTAGPDFIPCLDNWQAIRSLRTTKHYEHRERHCAAEAPTCLVPLPKEYRTPIEWPRSRDKIWYHNVPHTMLAQYKGHQNWVKMSGEYLTFPGGGTQFQHGALHYIDFIQQSVPEVEWGKQTRVVLDVGCGVASFGGFLFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDAIHCARCRVPWHIEGGKLLLELNRVLRPGGLFLWSATPVYQKEEEDVEIWEAMKVLTKGMCWEVVSIQRDRLNKVGIAIYRKPTSNKCYMKRSVNEPSLCPDFDDPNAAWNVPLQTCMHEAPENSTERAYKWPEEWPARLSKPPYWLLSSHVGVYGKPAPEDFTADYENWKNVVSGSYLNGIGVDWSKVRNVMDMRSVYGGFAAALRDLDVWVMNVVSIDAADTLPIIYERGLFGIYHDWCESLSTYPRSYDLLHANNLFSKLKKSCNLTGVVAEVDRILRPGGKFLVRDKSDMIKEIKGMVTSLHWKILTSYSNDKNGFLCAQKSTWRPKKKETLVYALALSKDLQRDQDIDKIIQRTLDLVTDVVIVTNNIKLHTIPLNLSKIMEDESYNNLPNGVITESPESPTLKTSSNNKEQDRFLPIANVGRIMKKVMPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKCYLQKYRDIEGEKLNIPKHQRSEQRLHHQHHDPNQTSSSNNNNLHLSSVYSSTNLISQPPYVPAGQPYALPFSPNSINQDQIDSVGHW 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1157 998 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 233 733 IPR004159 GO:0008168
Lele20g1157 998 MobiDBLite consensus disorder prediction 109 123 - -
Lele20g1157 998 CDD AdoMet_MTases 351 446 - -
Lele20g1157 998 SUPERFAMILY Histone-fold 830 932 IPR009072 GO:0046982
Lele20g1157 998 FunFam Nuclear transcription factor Y subunit B-3 822 947 - -
Lele20g1157 998 MobiDBLite consensus disorder prediction 124 138 - -
Lele20g1157 998 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 22 742 IPR004159 GO:0008168
Lele20g1157 998 ProSitePatterns NF-YB/HAP3 subunit signature. 864 880 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele20g1157 998 Gene3D Histone, subunit A 820 956 IPR009072 GO:0046982
Lele20g1157 998 MobiDBLite consensus disorder prediction 171 217 - -
Lele20g1157 998 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 257 509 IPR029063 -
Lele20g1157 998 PRINTS CCAAT-binding transcription factor subunit A signature 899 917 - -
Lele20g1157 998 PRINTS CCAAT-binding transcription factor subunit A signature 861 879 - -
Lele20g1157 998 PRINTS CCAAT-binding transcription factor subunit A signature 880 898 - -
Lele20g1157 998 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 534 703 IPR029063 -
Lele20g1157 998 Coils Coil 48 68 - -
Lele20g1157 998 MobiDBLite consensus disorder prediction 70 217 - -
Lele20g1157 998 FunFam probable methyltransferase PMT23 323 507 - -
Lele20g1157 998 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 833 897 IPR003958 -
Lele20g1157 998 MobiDBLite consensus disorder prediction 139 170 - -
Lele20g1157 998 Gene3D Vaccinia Virus protein VP39 323 488 IPR029063 -
Lele20g1157 998 MobiDBLite consensus disorder prediction 930 954 - -
Lele20g1157 998 MobiDBLite consensus disorder prediction 70 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1157 Lele-ChrLele20 16804979 16811514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1157 810 998 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.577 7.12e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele20g1157 Methyltransf_29 1.1e-222 CL0063