Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1154 ATGAATAACGGCACCCGAAAACGCCCCCCGCCGCCGTCGCAACCCTCACCCGCTAACCAGCCTAAGAGTCTAGCGTTCTCTCAGGAAGAAGAGTTCGTCGACGAGGATGTCTTCCTGGACGAAACCCTTATCTCTGAAGACGAAGAGTCCCTCATCCTCCGTGACATTGAGCAACGCCAGGCTCTCGCTTCGCGCATTGCCAAATGGACCCGTCCGCGTCTCTCCTCCGAGTATCTTTCACAATCCTGTAGCATTATCTTTCAGCAGCTGGAGATTGATTATGTTATTGGAGAGAGTCATAAAGAGTTTCTGCCAAATTCGTCTGGACCTGCCGCCATTATTAGAATATTTGGAGTTACGAAGGAAGGACATAGTGTTTGCTGCAATGTTCACGGATTTGAGCCATATTTTTACATCAGCTGCCCTCCTGGAATGAGACCAGATGATATTTCTGGTTTTCATAAAATCCTTGAGGGGAGGATGAAAGAGTCTAATAGAAATAGTAAAGTGCCACAATTTGTTCGCCGTATTGAGATGGTGCAGAGAAAGAGTATTATGCACTATCAGCAGCAGAACTCCCAGCCATTTTTGAAAATTGTAGTTGCACTGCCAACAATGGTTGCCAGTTGTCGAGGTATTCTTGACAGAGGCATTCAGATTGATGGCCTTGGCATGAAGAGTTTTATGACTTATGAAAGCAATATTTTGTTTGCCCTTCGTTTCATGATTGATTGCAATATAGTTGGTGGAAATTGGATTGAAGTACCTGCTGGAAAATACAAGAAGACAGCAAAGAACTTGTCTTACTGCCAATTAGAGTTTGACTGCCTGTATTCAGAGTTGATTAGCCATACACCAGAAGGGCATTTTTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGATATTGAGTGTGCTGGTCGCAAAGGTCATTTTCCTGAACCTACTCAAGATCCTGTTATCCAGATTGCCAACCTGGTCACATTGCAAGGAGAAGATCAACCATTTATTCGCAACGTCATGACTCTTAAATCATGTTCACCTATAGTTGGCACTGATGTGATGTCCTTTGGTACAGAAAGAGAAGTCCTGCTAGCATGGAGGGATTTTATCCACGAAGTGGACCCTGATATTATAATTGGATATAACATTTGCAAATTTGACCTGCCATATCTAATTGAGAGAGCTGATGCCCTGAAAATAGCAGAATTTCCAATTCTTGGACGCATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTCTCATCAAGACAGCTTGGGACTAGGGAAAGCAGAGAGGTTACAATAGAAGGGAGAGTTCAGTTTGACTTGCTCCAGGCTATGCAGCGAGATTACAAACTAAGTTCTTATTCATTGAATTCTGTTTCAGCACACTTCCTCTCAGAGCAGAAAGAGGATGTTCACCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGATACTAGGAGACGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAACGACTGTTGGATAAATTGATGTTTATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCAATTTCTTTTTTACTTTCTAGAGGGCAAAGCATCAAGGTACTGTCTCAACTTCTTAGGAAGGCAAAACAGAAGAACTTGGTTATTCCTAATGTCAAACAGGCTGGGTCAGAACAAGGAACATATGAAGGTGCCACTGTATTGGAAGCAAGAGCTGGATTCTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCATACAATCTATGCTACTGCTCTCTGGTGACCCCAGAAGATGTTCGCAAACTCAACCTACCTCCAGAGTCTGTTAACAAAACTCCATCTGGTGAAACGTTTGTTAAATCAAATTTACAGAAGGGAATACTTCCTGAAATTCTTGAAGAGTTATTAGGAGCCCGTCGAAGGGCAAAAGCAGATTTGAAGGAGGCAAAAGATCCTCTTGAGAAGGCTGTGCTGGATGGTCGTCAGCTGGCTCTAAAGGTCAGCGCAAATTCTGTATATGGGTTTACAGGGGCTACTGTTGGTCAGTTACCTTGCATAGAGATATCTTCAAGTGTAACAAGCTATGGTCGGCAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTTACAACACTCAATGGTTATGAGAACAATGCTGAGGTCATATATGGAGACACTGATTCAGTCATGGTACAATTTGGTGTTTCCTCTGTAGAAGAGGCTATGAAATTAGGGAGAGAGGCTGCTGAATATATAAGTGGAACTTTCATTAAACCCATCAAACTAGAGTTTGAGAAGGTTTACTTTCCATATCTTCTAATTAGCAAGAAGAGATATGCTGGTTTATTTTGGACAAAACCAGACAAATTTGACAAGATGGACACTAAAGGGATTGAGACAGTTCGAAGAGATAATTGTTTATTGGTAAAGAACCTGGTCAATGTCTGCCTTCACAAAATTCTGATTGATAGGGATATCCCTGGGGCAGTCCAGCATGTAAAGAATGCAATTTCAGATCTACTCATGAACCGCATGGATTTGTCACTTCTGGTCATTACAAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTAAAAGCAGCTCACGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGGGATAGAGTACCTTATGTCATAATTAAAGCTGCAAAGGGTGCCAAGGCTTATGAAAGGTCAGAGGATCCAATCTATGTGCTAGAGAACAACATACCAATAGACCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGGATTTTTGAGCCTATTTTGAAGAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTGTTTCTACGCCATCAAACTGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATCGGTTGCAAAGCTTTACTTAGTCTTTGTTATGCTGGGTTAGCAATGGAGATCGCACTCTATGCTCGCATTGCAGGGGAAGGGACGCTGAGCTGTACTGCAAAACAGTTGCTCAAGGCGCTTTTTGGTAAGCTTTGGACACAGTGTCAAGAATGCCAAGGTTCCCTTCATCAGGATGTTCTCTGCACAAGAGGAATCAGATTTGACTTTCAGAATCATTCGCGTACTCGAGACCCGAGACCTGATTACTTTTCCCCATTCCCTCGGTGTTTCTTTTCGCTGTCACTAGAGATGTGTTATTGTGCATCTTGCCTTCTGACGGTTCTTGAGACAAGAGTTGAAGGGGAACATGCCCCCAATGCTATCGCAGGCCCTGCAAAGTTTCTAACCCCTCGAAAGCATTCTGGATCGCGTCATCTACCTTCTTAG 3420 0.4237 MNNGTRKRPPPPSQPSPANQPKSLAFSQEEEFVDEDVFLDETLISEDEESLILRDIEQRQALASRIAKWTRPRLSSEYLSQSCSIIFQQLEIDYVIGESHKEFLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMRPDDISGFHKILEGRMKESNRNSKVPQFVRRIEMVQRKSIMHYQQQNSQPFLKIVVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNILFALRFMIDCNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSELISHTPEGHFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGTDVMSFGTEREVLLAWRDFIHEVDPDIIIGYNICKFDLPYLIERADALKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESREVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNADTRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCSLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLGARRRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYENNAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIKPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNVCLHKILIDRDIPGAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISVSTPSNCGIMKFAKKQLTCIGCKALLSLCYAGLAMEIALYARIAGEGTLSCTAKQLLKALFGKLWTQCQECQGSLHQDVLCTRGIRFDFQNHSRTRDPRPDYFSPFPRCFFSLSLEMCYCASCLLTVLETRVEGEHAPNAIAGPAKFLTPRKHSGSRHLPS 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1154 1139 ProSitePatterns DNA polymerase family B signature. 741 749 IPR017964 GO:0000166|GO:0003676
Lele20g1154 1139 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 70 1055 - -
Lele20g1154 1139 Pfam DNA polymerase family B 527 960 IPR006134 GO:0000166|GO:0003677
Lele20g1154 1139 Gene3D Palm domain of DNA polymerase 568 798 IPR023211 -
Lele20g1154 1139 Gene3D DNA Polymerase, chain B, domain 1 90 267 - -
Lele20g1154 1139 FunFam DNA polymerase 91 266 - -
Lele20g1154 1139 FunFam DNA polymerase 815 971 - -
Lele20g1154 1139 CDD DNA_polB_delta_exo 291 519 - -
Lele20g1154 1139 FunFam DNA polymerase 642 694 - -
Lele20g1154 1139 FunFam DNA polymerase 334 567 - -
Lele20g1154 1139 Gene3D - 295 513 IPR036397 GO:0003676
Lele20g1154 1139 Pfam DNA polymerase family B, exonuclease domain 120 463 IPR006133 -
Lele20g1154 1139 CDD POLBc_delta 568 961 - -
Lele20g1154 1139 PRINTS DNA-directed DNA-polymerase family B signature 739 747 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele20g1154 1139 PRINTS DNA-directed DNA-polymerase family B signature 586 599 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele20g1154 1139 PRINTS DNA-directed DNA-polymerase family B signature 678 690 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele20g1154 1139 SMART polmehr3 294 753 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele20g1154 1139 SUPERFAMILY DNA/RNA polymerases 552 962 IPR043502 -
Lele20g1154 1139 TIGRFAM pol2: DNA polymerase (pol2) 240 958 - -
Lele20g1154 1139 Gene3D - 815 970 IPR042087 -
Lele20g1154 1139 SUPERFAMILY Ribonuclease H-like 111 533 IPR012337 -
Lele20g1154 1139 MobiDBLite consensus disorder prediction 1 26 - -
Lele20g1154 1139 Gene3D Helix hairpin bin 642 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1154 Lele-ChrLele20 16780806 16792058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1154 6 1060 Core DNA Replication Machinery Family AT5G63960 80.223 0.0 1770