Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1153 ATGACGGTTGACGATGATTGCGTCGATTTTACAGGCCTTAACGACCTTAATTCAGAAGTCTTAGTTTTGCCTGGCTTTGATGAATTTTCAGAGAGCCAACTGTGTGTGCCTCCTGACTCGCTAGAAGACTTGCAATGGTTCCCCTGCTTCTCCGGTGATTTTATAACTTCGAAGAAAAGCTCCTTTTGTTTTACCAGTGACCAATTTCATACGCATGAACGTGGGGAGAAAACGGAGCAAACAAATGGAATTGTGAATGACGATTGGGTGGGCATTTCCGAGGTTTCAATAGGTGGCTTTACGAAGAAGAGTAGGACGAAGAATGGGGCGAGACGAAGCTTGACGGTGATTGATAGAAAGAGGTGCAGCCACTGCGAGACGGCGGAGACGCCGCAATGGAGGCATGGGCCTAATGGGCCCAAGACGCTGTGCAATGCGTGTGGTATGAGATTTAGATCCGGAAGGCTGTTGCCGGAGTATCGTCCGGCGGCCAGTCCTACCTTCGATGAATGCAGGCATTCTAATTACCATAGGAAAATAATGGAAAAGCGAGGATTAGATTGTTAA 567 0.4762 MTVDDDCVDFTGLNDLNSEVLVLPGFDEFSESQLCVPPDSLEDLQWFPCFSGDFITSKKSSFCFTSDQFHTHERGEKTEQTNGIVNDDWVGISEVSIGGFTKKSRTKNGARRSLTVIDRKRCSHCETAETPQWRHGPNGPKTLCNACGMRFRSGRLLPEYRPAASPTFDECRHSNYHRKIMEKRGLDC 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1153 188 Gene3D - 117 167 IPR013088 GO:0006355|GO:0008270
Lele20g1153 188 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 179 - -
Lele20g1153 188 Pfam GATA zinc finger 122 156 IPR000679 GO:0006355|GO:0043565
Lele20g1153 188 CDD ZnF_GATA 121 170 IPR000679 GO:0006355|GO:0043565
Lele20g1153 188 ProSiteProfiles GATA-type zinc finger domain profile. 120 152 IPR000679 GO:0006355|GO:0043565
Lele20g1153 188 PANTHER GATA TRANSCRIPTION FACTOR 106 184 - -
Lele20g1153 188 SMART GATA_3 116 166 IPR000679 GO:0006355|GO:0043565
Lele20g1153 188 FunFam GATA transcription factor 117 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1153 Lele-ChrLele20 16777986 16778552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1153 34 184 C2C2-Gata Transcription Factor Family AT3G60530 41.667 7.14e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele20g1153 GATA 3.5e-17 CL0167