Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1146 ATGAAGGGTGAATTAGAGTTACCCCCTGGATTCAGATTTCACCCGACGGACGAGGAGTTGGTGAATTACTATCTGTGTAGGAAATGTGCTTCTCAATCCATTGCTGTTCCTATTATCAAAGAGATTGATTTGTACAAGTTTGATCCTTGGCAGCTTCCAGAAATGACGCAATACGGAGAGAAAGAATGGTACTTCTTCTCACCGAGGGACAGAAAATATCCAAACGGATCAAGACCCAACAGGGCTGCCGGAAGCGGGTACTGGAAGGCGACGGGAGCTGACAAGGCCATCGGAAAGCCTAAGCCTCTCGGAATCAAGAAGGCGCTCGTTTTCTACGCCGGTAAAGCCCCCAAAGGCATCAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGATCGCTCTGCTCGCAAGAACAACAACTTGAGGCTTGATGATTGGGTATTGTGCCGGATTTACAACAAGAAAGGTGTTGTTGAGAAATACAACACCCAGGATCAGAAATCGAGCAGGATTTTCTCAGATATCGATGAGCACGAAACTAAACCAGAAATCAACGTGCTCGCCAATGACCAATTGTACATGGACACGTCGGAATCGGTGCAGCGGTTGCACCCGGACTCCAGCTGCTCCGAGCACGTGCTGTCGCCGGACGTCACTTGGTGCGACAGGGAGGTGCAGAGCGAGCCCAAGTGGAATGAGCTGGCTCTGGGATTGAAAGACGACGCCTTCGATTTCGAGTTCAATTACGTCAACGATATGAACAGTAACAACTTCCCAAGATATGACGCTCTTGCCCCCCAGATACAGTACCAAATGAACCAGCTCTCACCCTTACAGGACATGTTCGTGCATCTCCAGAAACCATTTTAA 879 0.4881 MKGELELPPGFRFHPTDEELVNYYLCRKCASQSIAVPIIKEIDLYKFDPWQLPEMTQYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGKPKPLGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSARKNNNLRLDDWVLCRIYNKKGVVEKYNTQDQKSSRIFSDIDEHETKPEINVLANDQLYMDTSESVQRLHPDSSCSEHVLSPDVTWCDREVQSEPKWNELALGLKDDAFDFEFNYVNDMNSNNFPRYDALAPQIQYQMNQLSPLQDMFVHLQKPF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1146 292 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Lele20g1146 292 FunFam NAC transcription factor 16 161 - -
Lele20g1146 292 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lele20g1146 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 209 - -
Lele20g1146 292 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Lele20g1146 292 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1146 Lele-ChrLele20 16745401 16746711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1146 1 292 NAC Transcription Factor Family AT1G01720 61.513 2.07e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele20g1146 NAM 2.9e-39 No_clan