Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1145 ATGGCGAAAGGTGGGAGACGAACAGCAGACATGAGATACACATCTTCATTTTCCTCGCACTGTTCAATCCAATCGATTTCACTGGAAGAGTCCACACTTCATCATACTATTTCCAAAATTCCAGAAGGTTCGTCAGAAATGGTAAAGGAAGAAGTCAGCAATGACAGTTCCTCAAATGTTGAGACTGAGGATTCAGAATCTCACTCTCAACATAGTCCTGAGAAGGAGACAGGCTGGACGAGGATGAATTGTCGTGTGTGCCAATGTGCTGAATCCGATAATAGGGGAGATGCTGCTCTAGAATTTTTGGGCATTGCTCCAGTTTTAGAACCTGATGTAAGTAATGTTGAAGAAAGGTCAGATTGCAAGGAAATTTCCAAAAATGCATCTCTTACAAGAAATGTTGGAAGTAAATCTGGGGTTGTGGAGTTTGTAGGCCCGGATGGAGAGGTTTTCATTTGCAAAACTGATTTAGAAATGGGTCTTTCTCATCGAGACACTCTTGTTGAACTTGGCTGTTGTTGTAAAAATGACCTTGCTGCAGTACACTATGCTTGTGCGCTTAAATGGTTTGTCAATCATGGATCTACCGTCTGTGAAATATGTGGAAATGTGGCAAAAAATATCAGAATTGCTGACTTCAATAAAGTTGTTGCTTCTTTGAAAGAGTATGAAGCATTGAGGGAAAGAACTGCCATTGGGCAACCCAGTCCTGCTCAAGTTCATGCAAATACTGGTGTAGATCCTGATGCTGTGGCTGCTATCAGGAGGCAACGGCTAAGTGAAATTGCACTATGGTTTTGTCCCCGTAATAACAGTAACAACAACAACAACAACAACATGGACACTGTCTCATCAGTCGTTTCTGAACAACCTTTAAATAGTGTTACTGAGTATGCTGCACCTGTTCAAAATCCTACAACTAAGTGGGCAGTGGAAATTACTGGGATCCTGCTGGCTACTGGGCTACTTACCGTCACCCTTGCATGGCTCATAGCTCCACGTGTTGGAAAGAAAACTGCAAGAAGTGGTCTTCATATCTTACTTGGAGGCATTTGCGCTTTAACGGTTGTGGTTTTCTTCCGCTTTTTCGTGCTCACCAGAATCAAGTACGGACCTGCACGTTACTGGGCAATTTTGTTCATTTTCTGGTTTCTTGTGTTCGGAATATGGGCTTCACGGACACACACCTGGTTTGGGGATAAGCACAAAAAGGAAAGGAAGTCCAGTCTATCAGGTGAAGCGACGTCGTCATGGGTCCTAAATCGTGTTGGGTCTTCCATTCTGTCCCGAGTTCATGGGAACGTTTATCCTGTAGGATTTGATAATGTTACTATGAATATAGGCCATCCACCAAGGCGTTATTTTCTTGATGTTGACTCTGGTAGCGACCTCACATGGCTCCAATGTGATGCTCCTTGTACCCGTTGTTCTGAGACACCACATCCACTGTACCAACCCGGCAAAGACTTAGTTCCCTGCAAAGATCCCCTCTGTGCATCGTTGCAGCCATCTGAAGACTACGAATGTCAACATCCTGATCAATGTGACTACGTAATCACGTACGCAGATCATTATTCATCTCTTGGTGTTCTTGTTAGGGATGTCTTCGTCCTCAACTTCACTAACGGAATCCAGCTTAAAGTTCGTGTGGCACTTGGATGTGGGTATGATCAGATATTTCCAGCTTCTTCTTACCACCCGTTGGATGGAGTACTTGGGCTTGGAAGGGGAAAAACCAGCTTCCTATCACAGCTTAGTGGTCAGGGTTTGGTAAGAAATGTTGTTGGACACTGTTTAAGTGCACAAGGTGGAGGGTACATCTCCGGAGATGTTTATGGTCATGTTACTTTTGACAGTGGCAGCTCTTACACGTACTTTAACTCTAACGCCTATGAAGCATTGATTTCTACATCGAAGAAGGAATTAAGCAGGAAGGCAGTTAAAGAAGCCCCTGATTACCAGACTGTTCCAGTTTGTCGGCATGGTAAAAGACCATTCAAGAGGATAAGTGAAGCCAGAAAATACTTCAAGCCTTTGGCACTGGTTTCACCAGAAGTGGTAAAGACCAAAGGAAATGTTTGCTTGGGCATTTTAACTGGCTCTGAAGTGGGCATGGGAGATATGAACCTAATTGGAGACATATCCGTGCTAGAGAAAGTGATCGTCTTCGACAATGAGAAGCACTTGATGGGTTGGGCACCCGCAAACTGCGACCGGGTTCCAAAATTCAGAGATGTCACCATTTGA 2250 0.4404 MAKGGRRTADMRYTSSFSSHCSIQSISLEESTLHHTISKIPEGSSEMVKEEVSNDSSSNVETEDSESHSQHSPEKETGWTRMNCRVCQCAESDNRGDAALEFLGIAPVLEPDVSNVEERSDCKEISKNASLTRNVGSKSGVVEFVGPDGEVFICKTDLEMGLSHRDTLVELGCCCKNDLAAVHYACALKWFVNHGSTVCEICGNVAKNIRIADFNKVVASLKEYEALRERTAIGQPSPAQVHANTGVDPDAVAAIRRQRLSEIALWFCPRNNSNNNNNNNMDTVSSVVSEQPLNSVTEYAAPVQNPTTKWAVEITGILLATGLLTVTLAWLIAPRVGKKTARSGLHILLGGICALTVVVFFRFFVLTRIKYGPARYWAILFIFWFLVFGIWASRTHTWFGDKHKKERKSSLSGEATSSWVLNRVGSSILSRVHGNVYPVGFDNVTMNIGHPPRRYFLDVDSGSDLTWLQCDAPCTRCSETPHPLYQPGKDLVPCKDPLCASLQPSEDYECQHPDQCDYVITYADHYSSLGVLVRDVFVLNFTNGIQLKVRVALGCGYDQIFPASSYHPLDGVLGLGRGKTSFLSQLSGQGLVRNVVGHCLSAQGGGYISGDVYGHVTFDSGSSYTYFNSNAYEALISTSKKELSRKAVKEAPDYQTVPVCRHGKRPFKRISEARKYFKPLALVSPEVVKTKGNVCLGILTGSEVGMGDMNLIGDISVLEKVIVFDNEKHLMGWAPANCDRVPKFRDVTI 749
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1145 749 Gene3D Acid Proteases 607 746 IPR021109 -
Lele20g1145 749 PANTHER ASPARTYL PROTEASES 615 732 IPR001461 GO:0004190|GO:0006508
Lele20g1145 749 SMART ringv_2 153 203 IPR011016 GO:0008270
Lele20g1145 749 ProSiteProfiles Peptidase family A1 domain profile. 442 749 IPR033121 -
Lele20g1145 749 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 616 627 IPR001969 GO:0004190|GO:0006508
Lele20g1145 749 Gene3D Acid Proteases 442 606 IPR021109 -
Lele20g1145 749 SUPERFAMILY Acid proteases 435 742 IPR021109 -
Lele20g1145 749 SUPERFAMILY RING/U-box 168 205 - -
Lele20g1145 749 MobiDBLite consensus disorder prediction 61 75 - -
Lele20g1145 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 206 IPR013083 -
Lele20g1145 749 Pfam Xylanase inhibitor N-terminal 444 608 IPR032861 -
Lele20g1145 749 FunFam Aspartyl protease family protein 420 611 - -
Lele20g1145 749 ProSiteProfiles Zinc finger RING-CH-type profile. 143 209 IPR011016 GO:0008270
Lele20g1145 749 MobiDBLite consensus disorder prediction 38 76 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele20g1145 Lele-ChrLele20 16738141 16744992 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1145 52 391 C3H Transcription Factor Family AT5G08750 63.429 9.52e-139 411