Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1144 ATGGGAGATGGCAATGGCGCCACCGGCACCAATCGGTCCAACAACAACAGTAATAAGCCCGAGTGGCTACAACAGTACGATCTGATTGGGAAAATTGGGGAAGGTACCTATGGTCTTGTATTCCTCGCAAGGATCAAGTCTGCCACGAATCGTGGAAAATCAATTGCCATCAAGAAATTCAAGCAGTCCAAGGATGGCGACGGAGTCTCTCCCACCGCTATCCGTGAAATTATGTTACTCCGGGAGATAACACACGAAAATGTTGTGAAGCTCGTGAATGTTCACATCAATCGTGCGGATATGTCTCTGTACCTTGCTTTTGATTATGCTGAACATGACCTTTATGAAATCATTCGGCATCACAGGGACAAAGTCAACCATTCTATTAATCAATATACCGTTAAATCATTACTTTGGCAGTTGCTCAACGGACTAAACTATCTACATAGTAATTGGATAATTCATCGAGACCTTAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACACGGTGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATACCAGGCCCCATTAAAGTCATTATCTGAAAATGGAGTTGTTGTCACCATATGGTATCGTGCACCTGAGTTGCTTCTTGGGGCTAAACATTATACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCCGAGCTGTTAACACTGAAGCCACTATTTCAAGGAGCAGAAGTCAAAGCGACACCTAATCCATTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGTAACTCATCTGCTCTAGTTTTTCTTTCTCTGTGCTGGATTTATTCATATATTCTTGATGAATATTTTGGAGTTACTTCATTGGACATTGTTACTTTGCCAGGCCATCCCACATTAGAAAAGTGGCCTACCCTAGCATACCTTCCCCACTGGCAACAAGATGTTCAGCATATACAAGGGCACAAATATGACAACACTAGCCTTTGTAATGTTGTACACCTACCTCCAAAAAGTCCTGCTTATGATCTGCTATCAAAGATGCTTGAATATGATCCTAGAAAGCGGATAACGGCAGCACAAGCTTTGGAACATGAGTATTTCAAAATGGAACCACTGCCTGGGCGTAATGCTCTTGTGCCCTGCCAACCTGGAGAGAAAATTGTGAATTATCCCACTCGTCCAGTTGACTCAACAGTAGATTTTGAAGGGACAACCAATTTGCAACCTTCTCAACCGGTTTCATCTGGAAATGCTGTTTCTGGCAACATGACTGGGGGCCATGTATCAAATAGATCTGTCCCTCGGCCAATGAATGTTGTTGGCATGCCAAGGGGGCCGCCTATGCAAGCTTATAATCTTGCATCCCAGGCAGGAATGGGTGGTGGAATGAATTCTAACATCCCTCTGCCACGAGGTGTTGCCCAGGCTCATCAGCAGCAGCAGTTGAGAAGGAAAGACGGTGGAATGATGTTGCCTGGATACCCTCCACAGCAAAAATCAAGGCGTAACTAA 1521 0.4385 MGDGNGATGTNRSNNNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINRADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKSLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGNSSALVFLSLCWIYSYILDEYFGVTSLDIVTLPGHPTLEKWPTLAYLPHWQQDVQHIQGHKYDNTSLCNVVHLPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKMEPLPGRNALVPCQPGEKIVNYPTRPVDSTVDFEGTTNLQPSQPVSSGNAVSGNMTGGHVSNRSVPRPMNVVGMPRGPPMQAYNLASQAGMGGGMNSNIPLPRGVAQAHQQQQLRRKDGGMMLPGYPPQQKSRRN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1144 506 MobiDBLite consensus disorder prediction 1 20 - -
Lele20g1144 506 Pfam Protein kinase domain 26 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1144 506 ProSiteProfiles Protein kinase domain profile. 26 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1144 506 FunFam Putative cyclin-dependent kinase E-1 110 284 - -
Lele20g1144 506 CDD STKc_CDK8_like 25 370 - -
Lele20g1144 506 SMART serkin_6 26 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g1144 506 MobiDBLite consensus disorder prediction 471 506 - -
Lele20g1144 506 PANTHER CELL DIVISION PROTEIN KINASE 24 376 - -
Lele20g1144 506 FunFam Cyclin-dependent kinase e-1 14 109 - -
Lele20g1144 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Lele20g1144 506 SUPERFAMILY Protein kinase-like (PK-like) 21 372 IPR011009 -
Lele20g1144 506 Gene3D Phosphorylase Kinase; domain 1 10 110 - -
Lele20g1144 506 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Lele20g1144 506 Gene3D Transferase(Phosphotransferase) domain 1 111 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1144 Lele-ChrLele20 16728728 16734377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1144 1 505 Core Cell Cycle Gene Families AT5G63610 71.429 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Lele20g1144 Pkinase 6.4e-66 CL0016