Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1094 ATGGACTCCTTTCTGGGTTTACTGCAAGAGGATGATAAGAATGTGATGATAGCTGCGGCGCAGGGTGTGGTTCCCGTGCTCGTTCGCTTACTGGATTCGAGCTCTTCGGAAATGAAGGAGAAGATCGTTGCTGCGATATCCAGAGTTTCAACTGTGGATGGCAGCAAGCATGCATTAATTGCCGAAGCTTTGGTGCTTTTGGATCATCTGCTTCGAGTTCTTGACCATGGAAGTGGGTTTTCTAAAGAGAAAGCTTGTATTGCCCTCCATGCACTAACGTTCTCTAAGGAGAACGCGAGGGCAATCGGGTGTAGAGGTGGAATTTCTTCTCTATTGGACATTTGCCAAGAAGGCACGCCTGGTTCCCAAGCTTCCGCAGGTGGAGTTCTGAGAAATCTTGCGGTTTTCCCTCAAGTCAGACAAAATTTCGTCGAGGAAAATGCGGTTGTTGTTTTGTTAGGGCTCGCTTCTTCGGGTACTGCAATAGCCCAAGAAAATGCAATTGGTTGTTTGTCTAATCTAATTTCTGATGACGAAAGCTTGAAATTAATGAGTGTTAAGGAAGGAGGGATTGGGTGTTTGAAGAATTTCTGGGACTCAGTTCCGTCCGTTCAGAGTCTTGAAGTAGCAATTGAGTTATTGAGAAACCTGACTTCGAGTCCACCGATTGCTAAAGTTCTTATTGCGGATGGGTTTATTCAGAGACTTGTGGGCGTGTTACATTGTTGTGTATTGACGGCGAGAATTGCAGCCGCTCGAGCTGTTTATGCTCTCGGGTCCAGCACCACAAAGGCGAAGAAAGAGATGGGCGAATGTGGATGCATTACTCCATTGATACAGATGTTAGACGGCAAAGCTGTTGAAGAGAAAGAAGCAGCTGCAATGGCTTTATCAGTACTCTTGTTACATACAGGCAATAGAAGGATTTTCCGAAAGGATGAGAGGGAGTGCGGTTCAGCTGCTGGATTCTTCAATACAGAATTTGGACAAGAAATACCCAGTTTCCATTCTGGTCTCACTTGTGCATTCAAAGACTTGTAG 1041 0.4553 MDSFLGLLQEDDKNVMIAAAQGVVPVLVRLLDSSSSEMKEKIVAAISRVSTVDGSKHALIAEALVLLDHLLRVLDHGSGFSKEKACIALHALTFSKENARAIGCRGGISSLLDICQEGTPGSQASAGGVLRNLAVFPQVRQNFVEENAVVVLLGLASSGTAIAQENAIGCLSNLISDDESLKLMSVKEGGIGCLKNFWDSVPSVQSLEVAIELLRNLTSSPPIAKVLIADGFIQRLVGVLHCCVLTARIAAARAVYALGSSTTKAKKEMGECGCITPLIQMLDGKAVEEKEAAAMALSVLLLHTGNRRIFRKDERECGSAAGFFNTEFGQEIPSFHSGLTCAFKDL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1094 346 Pfam Armadillo/beta-catenin-like repeat 12 48 IPR000225 GO:0005515
Lele20g1094 346 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 22 64 IPR000225 GO:0005515
Lele20g1094 346 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 317 - -
Lele20g1094 346 Gene3D - 204 314 IPR011989 -
Lele20g1094 346 SUPERFAMILY ARM repeat 7 311 IPR016024 -
Lele20g1094 346 SMART arm_5 95 135 IPR000225 GO:0005515
Lele20g1094 346 SMART arm_5 11 51 IPR000225 GO:0005515
Lele20g1094 346 SMART arm_5 220 260 IPR000225 GO:0005515
Lele20g1094 346 SMART arm_5 177 219 IPR000225 GO:0005515
Lele20g1094 346 SMART arm_5 136 176 IPR000225 GO:0005515
Lele20g1094 346 SMART arm_5 262 302 IPR000225 GO:0005515
Lele20g1094 346 Gene3D - 105 203 IPR011989 -
Lele20g1094 346 Gene3D - 3 102 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1094 Lele-ChrLele20 16473071 16474111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1094 7 194 U-box Gene Family AT2G23140 30.851 9.32e-14 70.5