Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1083 ATGGGATCATCAGAGGTATCGATCAAGGGAAATCGCATGGACGGGACTGGAGGAAGCCACTCATCTGTTTACAACAACCATAACGATGCTTGGAATCCTGCAGAGTGTCAGACTGCTCACTCATCATCAACTGCGAGAGCGCTTTACAAGGAGCTATGGCATGCTTGTGCTGGTCCCCTCGTTACAGTGCCCCGTGAAGGGGAACGGGTCTTCTATTTTCCTCAGGGACATATTGAGCAAGTGGAGGCGTCGACAAATCAGGTGGCGGACCAGCAGATGCCTGTGTATGATCTCTCATCGAAAATCCTTTGTCGAGTGATCAACGTGCTGTTGAAGGCTGAGCCGGACACCGATGAGTTGTTTGCCCAGTTGACCTTGCTTCCGGAGCCAAATCAAGATGAAAACGCCGTTGAGAAAGAGGCTCCGCCTCCTCCGCCGCCACGATTTAACGTGCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACGAGTACTCATGGTGGATTCTCAGTACTGAGACGTCATGCCGATGAATGCCTTCCTCCTCTGGATATGTCGAAGCAGCCACCAAACCAGGAGTTGGTGGCGAAGGATCTACACGGTAACGAGTGGAGATTCAGGCATATCTTTAGAGGTCAACCACGTAGACATTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCAAAGAGGCTTGTTGCGGGTGATGCATTTATATTTTTGAGGGGTGAGAATGGGGAACTTCGTGTTGGTGTAAGGCGTGCAATGAGAGAGCAGGGTAATGTTCCGTCCTCAGTGATCTCTTGTCACAGCATGCATCTTGGTGTCCTTGCAACTGCCTGGCATGCGGTTTCGACTGGGACCATGTTCACTGTGTATTACAAGCCCAGGACCAGTCCTGCTGAATTTATTGTTCCATACGAACAGTATATGGAGTCTCTAAAAAATAAATATACAATAGGAATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAGAGGCTTACTGGTACTGTTATTGGACTTGAAGATGCTGATACACAAAGGTGGCCGAAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAGCATTCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAACCTGCTCATGCTCCTCCAGCTCTAAACCCTCTTACACTGGCCAGGCTTAAAAGGCCCCGGTGTAATGCGGTTCCATCATCACCCGATTCCTCTGTTCTTACTCGTGAAGTGTCATCCAAGTTAAGTATAGACCCTCTGCAAGCAAGTGAATTTGCGAGGGTATTGCAAGGTCAAGAATTCTCGATCATGAGAGGCAATTTGGCGGAAAGCTATGAATCTGATAATGCTGAGAAGCCTGATGAAAAAAATGATGCAGTGTCTACTTCAAGTACGTTTGCTCCAGAGAACTGGACAGCAATCGGGAGGCATGAGCCTACATATTCAGATTTGCTTTCAGGCTTTGGGACAAGTGGAGATCGAACCCATTTATCCTTGGTACATCAAACTAGCCCTGTGGCTAGTCCTGGAAGAAAACATGCTTTAGGTCATGAAGGCAAGTTTAATATGGTAGCCTGCCCAAGGTCTGTAATGTTTTCTAATCTGTCATTAAACCTCTCGGATCCTAATATGAAAGGTTCTGCACAAGACAGTGATGTAGCTTACCATGCTAGGCGGAATGTGAGGTATGGTGCATTTGGTGATTACCCTGTGCTTCATGGTCACAAAGAAGAGCATAGGCATGGAAGCCTGTTGATGCCACCGCCTCCACCCCCAACTCAGCATGATAGTCCTGGATCAAGAGGCCTGTTGCAAAAACAAATGCCGGCAAGTTCACACGAGACTGTTAAAGCTAAAGAAGGGGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGTCCAAGTACACCAGAGCCTGCTACATCAAAAATAAATGTGGCATGTAAACCAGCTGGTCACAAGCATCTTACATCTCAACGGCCTTATAATAATGAAAGTGATTTGAAATCAGAACAATCAAGCGGACAGAAGCTGCCAGATGCTGTAGTTGCTACTGATGACCAAGAAAATCCATCACAAACGTTTCAACCACATATGAAAGGTGTTCAAGCCAAACTACGCAGTGATTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTTGGTAGATCAGTTGACCTTACAAAGTTCAGCAACTATGATGAATTAGTTGCTGAATTAGATGAATTGTTTGAATTTGGAGGGGAATTAAAGTCTTTGAAAAAGGATTGGCTTATCGTCTACACTGATAATGAGGGTGATATGATGCTTGTTGGGGATGACCCGTGGCAATTCCAGCTTCGCTCTAGAGAAGCAGGAGATTCTATAAAGGCCTTCCGGTTGGGAACTATGACGAAGACGACTGTGATTCCTAACTGTTAA 2457 0.4624 MGSSEVSIKGNRMDGTGGSHSSVYNNHNDAWNPAECQTAHSSSTARALYKELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQQMPVYDLSSKILCRVINVLLKAEPDTDELFAQLTLLPEPNQDENAVEKEAPPPPPPRFNVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPNQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMREQGNVPSSVISCHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNKYTIGMRFKMRFEGEEAPEQRLTGTVIGLEDADTQRWPKSKWRCLKVRWDETSSIPRPERVSPWKIEPAHAPPALNPLTLARLKRPRCNAVPSSPDSSVLTREVSSKLSIDPLQASEFARVLQGQEFSIMRGNLAESYESDNAEKPDEKNDAVSTSSTFAPENWTAIGRHEPTYSDLLSGFGTSGDRTHLSLVHQTSPVASPGRKHALGHEGKFNMVACPRSVMFSNLSLNLSDPNMKGSAQDSDVAYHARRNVRYGAFGDYPVLHGHKEEHRHGSLLMPPPPPPTQHDSPGSRGLLQKQMPASSHETVKAKEGDCKLFGISLISSPSTPEPATSKINVACKPAGHKHLTSQRPYNNESDLKSEQSSGQKLPDAVVATDDQENPSQTFQPHMKGVQAKLRSDSARSCTKVHKKGIALGRSVDLTKFSNYDELVAELDELFEFGGELKSLKKDWLIVYTDNEGDMMLVGDDPWQFQLRSREAGDSIKAFRLGTMTKTTVIPNC 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1083 818 FunFam Auxin response factor 152 256 - -
Lele20g1083 818 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 789 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele20g1083 818 SUPERFAMILY DNA-binding pseudobarrel domain 150 283 IPR015300 -
Lele20g1083 818 MobiDBLite consensus disorder prediction 607 621 - -
Lele20g1083 818 SMART B3_2 154 256 IPR003340 GO:0003677
Lele20g1083 818 FunFam Auxin response factor 317 389 - -
Lele20g1083 818 Gene3D - 151 256 IPR015300 -
Lele20g1083 818 MobiDBLite consensus disorder prediction 666 688 - -
Lele20g1083 818 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele20g1083 818 Gene3D - 716 798 - -
Lele20g1083 818 MobiDBLite consensus disorder prediction 657 688 - -
Lele20g1083 818 MobiDBLite consensus disorder prediction 586 627 - -
Lele20g1083 818 CDD B3_DNA 152 254 IPR003340 GO:0003677
Lele20g1083 818 Gene3D - 317 388 - -
Lele20g1083 818 MobiDBLite consensus disorder prediction 454 474 - -
Lele20g1083 818 ProSiteProfiles PB1 domain profile. 721 808 IPR000270 GO:0005515
Lele20g1083 818 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Lele20g1083 818 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Lele20g1083 818 SUPERFAMILY CAD & PB1 domains 724 794 - -
Lele20g1083 818 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1083 Lele-ChrLele20 16404060 16408507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1083 1 789 B3 DNA Binding Superfamily AT5G62000 61.800 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele20g1083 B3 1.8e-21 CL0405