Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1080 ATGGGTTCGGCTCTATGTCGTGAAGGCAACAATCGCAGGAGCAGAGAACGATGGATGCTTCGTCAATTATCAAAAGCTTCTGTGCTGAGAGTGAGAGGTGTCTGTGTACTCACTCACGGCTACCTCCTCACAAACAGAAAGAAGACAACGAGGACGAGGAAGAAGAAGATTCATTTTTTGAAAATGCATTTCGCTAAACTTGATGATTCGCCAATGTTCCGGCAACAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTACGGGCGAGATGCCAAAAGTTCTACAAAGGATGTCGCAAGTACACGGAAGGTCTTGGAGAGGGATATGACGGGGACATTGCTTTTGCGAGTGCCCTTGAAACTTTTGGGGGAGGGCATGGTGATCCTCTTTTTATTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGTACCTACAAAGAAGTTCTCCGGTCGCAGGTGGAGCACATGCTTAATGACCGGTTGTTGCACATTCTCAATGTTGACATCCTCGATGTTAAGGAAGCTCGAAAGCGGTTTGACAAAGCTTCCCTTGCATATGATCAGGCACGCGATAAGTTTCTGTCATTGAGAAAGAGCACTAAGATGGATGTTGCTACTGCCATCGAAGAGGAATGGCACGGTGCAAGAGATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCCGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTCTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCACCAAGAAAGTAGATTATCTTTAAATGGTCCCCATGGTTCTCCTGGAGAATGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTAGTAGATGCCGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGACAAGGATTTCTTTCAAAACGCTCCTCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTTGGCGCATAGTGGCAATCCACCATCTGTACAGAGAAATAATGCCAATGAAAATGGTTCTGGAATACTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGATCTGTGGCACGTCATGCAGTGAACCTACTTACATCAACAATTAAGGTTGATGCTGATCAGTCAGATTTACGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATTCAGTGGACCAGATGGATTGGATTGAAAAAATGACCGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCAGTAGAAATGCCTCTCACAGTTGACTCTGAAAGTGGTGGATGTTCCTCTTCAAGCAATATTGATATACTGGAAAACTTTCAAGACGATATTCAATCAATGAGTAACGAGTGTGCATCCAAGAACATCACTTCAAATAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTACTAGAGGTGAAAACCCAATTGACATTCTTAGAAGGGTAAGTGGAAATGACAGATGTGCAGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGTATTCTCATATGCATCGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTCAGATCACTGACACTTGATGTGAAAGTCTGGGACCCTTCTGTCATAACCATGTTTCAGTCCCTGGGCAATCATTTTGCTAACACAGTTTGGGAAGAGAGGTTGCATTCAGCAAGTAAAATGCAAGCTGGTGACATGACTGTTGAAAACAAATTGCTCCGTGTAAGGAAACCAGAGCATGATGATTCTATTTCATTAAAAGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGAATAACAACCATCTCCTTTCAGTGGCACAACAGTTATGGGAAAGCGTCTGTGCCAATGACAAGAAAGCAGCATACCGGTATATTGTGAAGTCTGATTTGGATGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGATGCTTTTGACATGCCTTCTTCAAGCAATTCAAAATCTTCAGCCAAGAGTGAAAATCAGCCAATAGAGGACATACTTGATGGTTCAACCGTGCTGCACCTGGCATGCCTGACTGCGGACATTGCCATGGTGGAGCTACTCTTACAATATGGCGCAGACATAAATGCTTCCGATTCAAGAGGTCGCACCCCACTGCATTACTCTATCATCAGAGGGAAGAATGCAACTGCAAAATTGCTTGTAATGAGGGGGGGCAATCCACATGCCGCAGATGATGAAGGCAATACTCCTCTTAAACTTGCATCGGAATCCGCTTCTATTAGCAATGATGTTCTCGCTCTCACTACAAGAAGATGA 2577 0.4237 MGSALCREGNNRRSRERWMLRQLSKASVLRVRGVCVLTHGYLLTNRKKTTRTRKKKIHFLKMHFAKLDDSPMFRQQLQCLEEGVDSLRARCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFIALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDILDVKEARKRFDKASLAYDQARDKFLSLRKSTKMDVATAIEEEWHGARDSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYAQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPHGSPGECVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNLAHSGNPPSVQRNNANENGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENSVDQMDWIEKMTGVIASLLSVQSVEMPLTVDSESGGCSSSSNIDILENFQDDIQSMSNECASKNITSNNHLREYKSFQLHKQSTRGENPIDILRRVSGNDRCADCGKPEPEWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVITMFQSLGNHFANTVWEERLHSASKMQAGDMTVENKLLRVRKPEHDDSISLKERFIHAKYSEKIFVDQIKNNNHLLSVAQQLWESVCANDKKAAYRYIVKSDLDVNAVCGQEYFDDAFDMPSSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYSIIRGKNATAKLLVMRGGNPHAADDEGNTPLKLASESASISNDVLALTTRR 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1080 858 CDD ArfGap 562 685 - -
Lele20g1080 858 PRINTS HIV Rev interacting protein signature 613 634 IPR001164 GO:0005096
Lele20g1080 858 PRINTS HIV Rev interacting protein signature 590 607 IPR001164 GO:0005096
Lele20g1080 858 PRINTS HIV Rev interacting protein signature 571 590 IPR001164 GO:0005096
Lele20g1080 858 SMART arf_gap_3 559 698 IPR001164 GO:0005096
Lele20g1080 858 ProSiteProfiles PH domain profile. 352 488 IPR001849 -
Lele20g1080 858 SMART ANK_2a 767 796 IPR002110 GO:0005515
Lele20g1080 858 SMART ANK_2a 800 829 IPR002110 GO:0005515
Lele20g1080 858 ProSiteProfiles ARF GTPase-activating proteins domain profile. 559 698 IPR001164 GO:0005096
Lele20g1080 858 Pfam Ankyrin repeats (3 copies) 772 851 IPR002110 GO:0005515
Lele20g1080 858 ProSiteProfiles Ankyrin repeat profile. 767 799 IPR002110 GO:0005515
Lele20g1080 858 SUPERFAMILY PH domain-like 265 487 - -
Lele20g1080 858 Coils Coil 288 308 - -
Lele20g1080 858 ProSiteProfiles Ankyrin repeat region circular profile. 767 798 - -
Lele20g1080 858 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 541 699 - -
Lele20g1080 858 SUPERFAMILY Ankyrin repeat 715 844 IPR036770 -
Lele20g1080 858 Coils Coil 179 199 - -
Lele20g1080 858 PANTHER CENTAURIN/ARF 63 854 IPR045258 GO:0005096
Lele20g1080 858 Gene3D - 746 852 IPR036770 -
Lele20g1080 858 Pfam BAR domain of APPL family 67 293 - -
Lele20g1080 858 Gene3D - 345 498 IPR011993 -
Lele20g1080 858 Pfam PH domain 354 484 IPR001849 -
Lele20g1080 858 Gene3D Arfaptin homology (AH) domain/BAR domain 65 312 IPR027267 -
Lele20g1080 858 Gene3D Arf GTPase activating protein 539 699 IPR038508 -
Lele20g1080 858 SMART 5bar 45 279 IPR004148 GO:0005515|GO:0005737
Lele20g1080 858 SMART PH_update 353 490 IPR001849 -
Lele20g1080 858 CDD PH_ACAP 355 492 - -
Lele20g1080 858 ProSiteProfiles Ankyrin repeat region circular profile. 800 832 - -
Lele20g1080 858 SUPERFAMILY BAR/IMD domain-like 67 375 IPR027267 -
Lele20g1080 858 Pfam Putative GTPase activating protein for Arf 562 692 IPR001164 GO:0005096
Lele20g1080 858 ProSiteProfiles Ankyrin repeat profile. 800 832 IPR002110 GO:0005515
Lele20g1080 858 CDD BAR_SFC_plant 76 276 IPR035670 -
Lele20g1080 858 SUPERFAMILY ArfGap/RecO-like zinc finger 560 692 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1080 Lele-ChrLele20 16384763 16393753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1080 545 692 C2H2 Transcription Factor Family AT3G07940 36.424 8.13e-23 97.4