Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1075 ATGCCTTTTGAAATAATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAGGACTGTTGTATTGCAGAAGCCAAAATCCTTTCATGACCATTATTTACAAGGGAAAATAGGAGCATCACCGCGAAGCATTTCAAATACATCGTCATCTCTAGAAATGAGTGCTAACTCTGGCTTGCCAATGTCACAAACAAGTCTGTCGGGAGAAGTTACAGAAAAGCTGCATGTTGGTGGAGGAGGCATCATTGATGTGTTGAAGTCTACCAAGGAATCAATGAATCCTCACCCCAGATCATGGTCTAATGTGCATATGCAGCCAGAATCTACATCTTATAGTTTAACTGGAAAAAAGATTCTCACTGATACTGCTTCTCATGAGAGCAGCCTATTCTCTAGCTCACTGTCTGAGATATTTAGCCAAAAATTGAGGTTATCTAGGAATGATATCCTGTCTCGTCAGCCTGTAACCATTGGTTCGTTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCGGACACTATTGGGAATCTTCTTCCTGATGATGATGATCTGTTTTCTGGTGTTACTAATGAGTTAGGATGCACTGCCAATGCCGGAACAAGTGATGACTTTGAGGAGTTTGATTTGTTTAGCAGTGGCGGAGGCATGGAACTGGAAGGAGATGAACATCGAAGTTTGGGAAAGAAAATCAGTAGTCTGGATGTAGATTCTGGTTATTTTGTAGGTTTTAAAGGAAAGCTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTTGAAGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGAAATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTACGGGCAGCACAAAATGCTATGCAAGCACTTCAGAGTCGGTCATTGAGATCTAGGAAACTTGACATACACTATTCAATTCCAAAGGGCAATGCTCCTGAGAGGGATCTAAGCCATGGTACGCTAGTGCTGTCTGGTCTTGATTCTTCTGTTTCAAATGACGAGCTTCAACAGATTTTTGGATTTTATGGAGAACTAAAAGAAATCTACGAATATCCAGAAGTAAATTATAAAAAAATTATTGAATTTTATGATGCACGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGTAAGCAGATCAAGATTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGCATGAGTCTCATAATGGCCAAGATGAACCTGATTTTGGTCAAAGTATCTGTGACAACTTATCCCTAAGACACAAGGCAACCATGTCTTCTGGAGTAATTGCATCTGGATGCTTAGAAAATGGATCCAATCCAGGATTTCGCTCTGCAATACAGCAACCTATTAATGCATTAATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATCCACAAATCAGTGAGAGGGCCAACTTCTGGAAAAGTGCCTGGTGTTTGCGATTCCAGCAACTTCCTCGATGCAATGAAATTTGCTTCTGTTCCAAGATTCCATCCTCATTCCCTCCCTGATTATCATGATAGTTTTGCTAATGGTAGTCCTTACAACTTTTCAAGCATTGTTGGCAATGTGGCTGGCAATATTGGTACTGCAGTGACAGACAGCTCAGATAGCAGGCACAATCAGGGAATAGGTTCAACTGGGAATCTGATGGAAGTTACTGGAGCAGGAAATGGGAACCATCAACGTCATGGACTTTATCATGTGTGGAACAGCTCCAACTTGCCTCAGGAACCTTCAACAAATCCCTTGCTTTGGCAGAAAACACCATCGTTTGTTAACGGTGCTTGTGCTCCTGGCCTTCCGCAAATGCCCAGCTTTCCTAGAACACAGCCTCACATGCTGAGATCATCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCAACACCCTGGGACAGGCAGCACTCTTATTTGGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTAGGAAGTTCTGGTTTACCTGGTAGCTGGCAATTGCATCCTCCAGATTTTTCTTCTCACAACATGTTTCCTCATATCGGTGGAAATGGTGCAGAATTGACGCCTACTGCTCGGCAAAACTCTCCTAGTCAGTTGTCACATGTTTTCCCTGGGAGACATCCCATGACTTCTATGTCCAAACTTGATTCCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAATGAAGCTAATGCTAATAATGCTGATAAAAAGCAATATGAACTTGATCTGGGTAGCATAATGCGTGGGGAAGACAGCCGAACAACTCTCATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGTTAGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAGGACAAGCGTTGCCGTCCTATTCTGTTCCACACAGATGGCCCGAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAACATTAGAATGAGGCCCGGAAAATCTCGCGGTAGTACTAATAATGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGGAAGCGGAGAGGGATCTACTACCAATGTTATAGATTCTTCATTGAGCTCTTAA 2901 0.4223 MPFEIMNQRGISASSHLFDDNSFFPERTVVLQKPKSFHDHYLQGKIGASPRSISNTSSSLEMSANSGLPMSQTSLSGEVTEKLHVGGGGIIDVLKSTKESMNPHPRSWSNVHMQPESTSYSLTGKKILTDTASHESSLFSSSLSEIFSQKLRLSRNDILSRQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDDDDLFSGVTNELGCTANAGTSDDFEEFDLFSSGGGMELEGDEHRSLGKKISSLDVDSGYFVGFKGKLPFGEQPSRTLFVRNINSNVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLRAAQNAMQALQSRSLRSRKLDIHYSIPKGNAPERDLSHGTLVLSGLDSSVSNDELQQIFGFYGELKEIYEYPEVNYKKIIEFYDARAAEAALRALNRSDIAGKQIKIEPGHPRGTTCLTHESHNGQDEPDFGQSICDNLSLRHKATMSSGVIASGCLENGSNPGFRSAIQQPINALIDNAFSPVNSSIHKSVRGPTSGKVPGVCDSSNFLDAMKFASVPRFHPHSLPDYHDSFANGSPYNFSSIVGNVAGNIGTAVTDSSDSRHNQGIGSTGNLMEVTGAGNGNHQRHGLYHVWNSSNLPQEPSTNPLLWQKTPSFVNGACAPGLPQMPSFPRTQPHMLRSSHMDHHVGSAPVNATPWDRQHSYLGVSPETSGFRMGSLGSSGLPGSWQLHPPDFSSHNMFPHIGGNGAELTPTARQNSPSQLSHVFPGRHPMTSMSKLDSNERMRNLYPLRKNEANANNADKKQYELDLGSIMRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMLDPAQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRMRPGKSRGSTNNEENRSQGSPSTLGSGEGSTTNVIDSSLSS 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1075 966 SMART rrm1_1 353 421 IPR000504 GO:0003723
Lele20g1075 966 SMART rrm1_1 268 336 IPR000504 GO:0003723
Lele20g1075 966 SMART rrm1_1 795 871 IPR000504 GO:0003723
Lele20g1075 966 SUPERFAMILY RNA-binding domain, RBD 264 426 IPR035979 GO:0003676
Lele20g1075 966 MobiDBLite consensus disorder prediction 928 966 - -
Lele20g1075 966 FunFam Protein MEI2-like 1 351 445 - -
Lele20g1075 966 CDD RRM1_MEI2_like 266 341 IPR034453 -
Lele20g1075 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Lele20g1075 966 CDD RRM3_MEI2_like 796 881 IPR034454 -
Lele20g1075 966 Gene3D - 256 350 IPR012677 -
Lele20g1075 966 MobiDBLite consensus disorder prediction 726 750 - -
Lele20g1075 966 Gene3D - 351 442 IPR012677 -
Lele20g1075 966 FunFam MEI2-like protein 5 isoform 2 256 350 - -
Lele20g1075 966 Pfam RNA recognition motif 2 793 889 IPR007201 -
Lele20g1075 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Lele20g1075 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Lele20g1075 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Lele20g1075 966 MobiDBLite consensus disorder prediction 906 966 - -
Lele20g1075 966 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Lele20g1075 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 77 944 - -
Lele20g1075 966 MobiDBLite consensus disorder prediction 48 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1075 Lele-ChrLele20 16351413 16357525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1075 262 420 Eukaryotic Initiation Factors Gene Family AT3G16380 24.444 1.37e-07 53.5