Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1053 ATGGATTGGAATTTAAAGGGTGGCTCTTGGGATTTGACTGAATTAGATGGGGGAGGTTTACCCAACGTAGAAACAAGCAGATTTGGATTAGTGAACGGCAGTGGAAGCGAATTTTGTGTTGATTTGAAGCTGGGTCAGGTCGGGAATTGTGGGACTGAAGTATCAGGACCCAAGTGGAAAGCTGCCGGCGGCGGCGGAGTCTCGAAAACGGCAGTGTCGGGCACTTCAGGATCCTCGAAGAGAGCCCGAGCAATCAACAACGGGATCCAAAAGGCGTCGTGCCTGGTGGATGGGTGCAGTTCAGATCTGAGTAATTGTAGGGAGTATCACAGGCGTCACAAGGTGTGTGAACTCCATTCGAAGACTCCGGTGGTCACCATTGGAGGCCTCAAGCAAAGGTTCTGCCAACAGTGTAGCAGTGCCTTGACATTTACTCTTTGCTTCCATTTTCTTAAATCAGAGACATTCAGAATTTGTAGTTGCCGAAAGAAACTAAAGTACCCTAGTTCATCACTTTTTCTCAATTCCCTAGCAGCAAGAATCCCAGTACCAATAACCTATTCCATTTTGATACTTTTCCAGATTACAACATTCTTCTTGCATGGAATCTCAGAAAAGCGACTTCCCCGTATTGCTGCTATATTTATATTTTCAGGGAGGCAGTTACTACGGTTATCATCGGACTCAAATATGTATCCTTCAAGTGCTGCTATGGTGAACCCGGGCTGGGACTGGGAATGGGATGCTAGGACGACGGTTCATCATCATCATCATCATAATAAGCCGCATCTATTTCTGGGGTCTTCTGAAAGCGCCAGAATTAAGCAGGAAACGACTACATATCATGAAGCTGCTTCTGCATGCCAGACCCTTCCGAGGACGACGGCGAGGCCTGGGTCTTTCTCATCGGCGGAGGAGGCTCCTCCGCCTTGTGCTCTCTCTCTTCTGTCATCACCGCCGGCACCCATGTACCTGTCGCAGTCTAGTCTAGGCCCCACCACCCTCCACGATCATCACTCCTTACAAGACGCTATGGACACCACACTCCTGGTCAGAAATGGAACTCAGCCTCCGATATTTAACTTATTAGGGTCTGATGCATCATCCCAGGGGATCCATACTTCTCAGTCACTTCCATTTCATCGGGAATAA 1152 0.4835 MDWNLKGGSWDLTELDGGGLPNVETSRFGLVNGSGSEFCVDLKLGQVGNCGTEVSGPKWKAAGGGGVSKTAVSGTSGSSKRARAINNGIQKASCLVDGCSSDLSNCREYHRRHKVCELHSKTPVVTIGGLKQRFCQQCSSALTFTLCFHFLKSETFRICSCRKKLKYPSSSLFLNSLAARIPVPITYSILILFQITTFFLHGISEKRLPRIAAIFIFSGRQLLRLSSDSNMYPSSAAMVNPGWDWEWDARTTVHHHHHHNKPHLFLGSSESARIKQETTTYHEAASACQTLPRTTARPGSFSSAEEAPPPCALSLLSSPPAPMYLSQSSLGPTTLHDHHSLQDAMDTTLLVRNGTQPPIFNLLGSDASSQGIHTSQSLPFHRE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1053 383 MobiDBLite consensus disorder prediction 287 309 - -
Lele20g1053 383 Pfam SBP domain 94 141 IPR004333 GO:0003677
Lele20g1053 383 MobiDBLite consensus disorder prediction 362 383 - -
Lele20g1053 383 Gene3D - 85 166 IPR036893 GO:0003677|GO:0005634
Lele20g1053 383 MobiDBLite consensus disorder prediction 362 377 - -
Lele20g1053 383 MobiDBLite consensus disorder prediction 287 301 - -
Lele20g1053 383 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Lele20g1053 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 151 IPR044817 GO:0003677
Lele20g1053 383 SUPERFAMILY SBT domain 93 167 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1053 Lele-ChrLele20 16246231 16248308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1053 1 243 SBP-box Gene Family AT5G50670 36.364 4.84e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele20g1053 SBP 2e-15 No_clan