Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1040 ATGCAGAGTTTCTCCCATTTACAGTTCGATAGCAGCGAGGATAGCAGATATCAGTCCCAACAGCTCCATACCTCACAGTCAACAGTTCATTATAAATTAGTTCAGAATTTGAATTCCCCCGGCTTGTTGCTCACCCTTCGATCAAACCGTGGAAGCAGAGCATACCCATTTGGCCAATTCTCGAGAATCTACTGCCCCATGGAGAACAACCAGCAAGCCCCGTCCTCCGCGTACCCACCTCAAACCCCTGCTCCACCCCCTTTCCACCACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCTTACCAGCGCCAAGAAATCGAGCATGTCAACGATTTCAAGAACCACCAGCTGCCCCTCGCTCGAATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGTGAGCTTTTCATCCTCGAGCTCACCATTCGATCTTGGCTCCACGCCGAGGAGAACAAGAGGAGGACCCTCCAGAAGAACGACATAGCCGCTGCCATCACCAGGACTGATATCTTTGATTTCTTGGTCGATATTGTGCCCAGAGATGAGATCAAAGACGAGGCTGGCCTTGGGGGCATTGTGGGTACCACCGCCAGCGGTGTCCCTTACTATTATCCTCCCATGGGCCAACCTGCTGGCCATCCCGGAGGCATGATTATTGGACGGCCAGCCGTCGATCCCACCGGAGTCTACGTGCAACCACCATCGCAGGCTTGGCAGTCGGTATGGCAGACAACTGCTGAGGATGGATCATACGGTAGCGGTGGCAACAGTGGACAGGGCAACCTTGATGGTCAGAGGGTTGTGGAACTTAACCCCACCTGCATCTTCAGTGGCAAACTAGGAGCTCGATATCATGTCTATATTAGTGCTGTTCTTGAGATGTCTTCTATTCTTTTATTCTCTCGTGAAACGGATCTCACCCTCCACTCTAGAATATAATGTTTGTGCGGTGTAAACATTTATAGTTTAACCACATATACAGATGAAATTACTAGATTTAGCGTTAGCAAGTTTGTGATTTTGAGGATGATTGGAAGAATTCATGATGACAATGAGAGCGTGCAAGTCCATGTCTTTCACAAGGGAAGAAGATATCTGATTGGAGTTTACAGATTCTTGTTGGAAACGTGA 1185 0.4987 MQSFSHLQFDSSEDSRYQSQQLHTSQSTVHYKLVQNLNSPGLLLTLRSNRGSRAYPFGQFSRIYCPMENNQQAPSSAYPPQTPAPPPFHHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGIVGTTASGVPYYYPPMGQPAGHPGGMIIGRPAVDPTGVYVQPPSQAWQSVWQTTAEDGSYGSGGNSGQGNLDGQRVVELNPTCIFSGKLGARYHVYISAVLEMSSILLFSRETDLTLHSRIXCLCGVNIYSLTTYTDEITRFSVSKFVILRMIGRIHDDNESVQVHVFHKGRRYLIGVYRFLLET 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1040 394 Pfam Core histone H2A/H2B/H3/H4 98 183 IPR007125 GO:0003677
Lele20g1040 394 SUPERFAMILY Histone-fold 80 192 IPR009072 GO:0046982
Lele20g1040 394 FunFam Nuclear transcription factor Y subunit gamma 89 198 - -
Lele20g1040 394 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 80 221 - -
Lele20g1040 394 Gene3D Histone, subunit A 88 198 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1040 Lele-ChrLele20 16186824 16190128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1040 88 283 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.614 8.01e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele20g1040 CBFD_NFYB_HMF 5.9e-17 CL0012