Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1017 ATGTATCCTCCTCTTTATAGAGTCGCCGTCAAGGATGAGATTGTTGATGGTGAAAATTCAGTATTTGGCCTCAGTCTTCGACTCGCAGCAATGGGTTGCTATTCTTATCCTCGTATTCCTCCCAGTTCTGCTTCCACTAATTGGATCCTTCCTCGTTCCGATGATGATGAAACCAAGAGGGACCTAAAACTGATTAAGAGAACCATAAGCATGTCCGATATGCTTGGAAATTTCACTAGTAATCATTCGAGCTGTGGAAATACTGGCGATACACATGGCAGCAGTATGATTAGCTTGCCAAGGCTTCATTTCAGAGATCACGTATGGACTTATACTCAGAGACACCTTGCAGCTGAAGCTGTTGAAGAAGCAGCAAAAGAGAAGATCGATGAAGATGAAGCTGAGAAAGATGGATGTGCTGACGGAATGAGACTTGTTCAACTTCTAATTGCTTGCGCAGAAGCTGTGGCTTGTCGTGACAAATCACATGCTTCTAATTTACTAACTGAACTTAGAGCCAACGCTTTGATTTTCGGTTCTTCTTTTCAAAGAGTCGCTTCTTGTTTCGTCCAGGGCCTAGCCGATCGTCTTGCCTTGACAGAACCTATTGGCGCTGTGGGATCTGTAAAGCCTATAATGAACATTATGGATAAAGCTTCTGCAAAAATGGAAGAAGCTTATAGATTGATGTATGAGATTTGCCCACATATTCAGTTTGGTCACTTTGTAGCTAACTCCACGATATCGGAAGCCTTTGAGGGTCAGAGTTTTCTTCATGTGGTTGACTTGGGGATGAACCTTGGCTTCCCCCATGGACACCAATGGCGAGCACTGATCCAGAATCTTGCTAACCGTGCCGGCGAACCTGTTTGCTGGCTTCGGATTACCGGCGTTGGCCTCTGTATTGAGAGACTCAAGAACGTAGGTGAAGAACTCGAGGTTTATGCCAAGAACTTGGGGATCAATCTGGAATTCTCAGCAGTGCAAAAAAGCTTGGAAAATTTGAGTCCTGGGGATATAGAAGTGCGTGAGGGTGAAGTTCTTGTTGTGAACAGCATGCTTCAGTTGCATTGTGTGGTAAAAGAAAGTCGTGGAGCTTTGAACTCAGTGCTTCAGATGATTCAAAAGCTTTCACCAAAAGTTTTTGTTATGGTTGAGCAGGATTCAAGCCACAACGGACCCTTCTTTCTTGGGAGATTTATGGAAGCACTGCATTATTACTCTGTGATTTTTGACTCACTTGATGCTGTGTTGCCCAAGTATGACACAAAGAGGGCTAAAATAGAACAGTTTTACTTCGGGGAGGAGATAAAGAACATAGTGAGCTATGAGGGAGCAGCGAGGGTGGAGAGGCATGAGAGATTGGAGCAGTGGTGGAGGAGGATGAGCCGGGCCGGGTTTCAGGCGGCGCCGATCAAGACGGTGGCTCAGACCAAGCAGTATCTTCAGAAGAAAGTGGTCAGTGATGGATATACCGTTGTGGAAGAGAAAGGATGCTTAGTGATTGGATGGAAATCACAGCCAATAGTTGCAGCTTCTTGCTGGAAATGCTAA 1554 0.4505 MYPPLYRVAVKDEIVDGENSVFGLSLRLAAMGCYSYPRIPPSSASTNWILPRSDDDETKRDLKLIKRTISMSDMLGNFTSNHSSCGNTGDTHGSSMISLPRLHFRDHVWTYTQRHLAAEAVEEAAKEKIDEDEAEKDGCADGMRLVQLLIACAEAVACRDKSHASNLLTELRANALIFGSSFQRVASCFVQGLADRLALTEPIGAVGSVKPIMNIMDKASAKMEEAYRLMYEICPHIQFGHFVANSTISEAFEGQSFLHVVDLGMNLGFPHGHQWRALIQNLANRAGEPVCWLRITGVGLCIERLKNVGEELEVYAKNLGINLEFSAVQKSLENLSPGDIEVREGEVLVVNSMLQLHCVVKESRGALNSVLQMIQKLSPKVFVMVEQDSSHNGPFFLGRFMEALHYYSVIFDSLDAVLPKYDTKRAKIEQFYFGEEIKNIVSYEGAARVERHERLEQWWRRMSRAGFQAAPIKTVAQTKQYLQKKVVSDGYTVVEEKGCLVIGWKSQPIVAASCWKC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1017 517 Pfam GRAS domain family 145 516 IPR005202 -
Lele20g1017 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 121 511 IPR005202 -
Lele20g1017 517 Coils Coil 117 137 - -
Lele20g1017 517 ProSiteProfiles GRAS family profile. 136 516 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1017 Lele-ChrLele20 16050341 16051894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1017 137 517 GRAS Transcription Factor Family AT1G66350 36.269 1.95e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele20g1017 GRAS 4.8e-111 CL0063