Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1010 ATGGCGGCTGCAGCAGTAGCCGAGCCTAGGAAAGCCCCTCGACCGGGTAAGGGCGGGTTCGAAGCTCATGGCCTTTCTGAAGAGGAAGCCCGGGTTCGAGCCATTGCAGAGATCGTCAACTCTATGGTGGAACTCTCGCGGAAAGGCCAAAACGTCGACTTGAATGCGCTCAAATCCGCAGCATGTCGCAAGTATGGACTTTCACGTGCACCCAAGCTAGTGGAGATGATAGCTGCCCTACCGGAGACGGAAAAGGAGGCGCTGCTGCCGAAGCTTCGAGCCAAACCTGTCCGAACTGCCTCTGGAATAGCCGTCGTGGCTGTCATGTCCAAGCCACACCGTTGCCCTCACATAGCGACTACTGGCAATATTTGCGTATACTGCCCCGGAGGGCCTGACTCGGATTTTGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACTAGTATGCGAGCAATTCGAGCTAGTTATAACCCATATGTCCAAGCTAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTGGATAAGGTCGAGTTCATTTTAATGGGTGGTACTTTCATGTCCCTTCCGGCAGACTATCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCCGGACAAACTTCTGCAAATGTTGAAGAGGCAGTTGCCTACTCTGAGCATGGTGCAACAAAATGTATTGGCATGACAATAGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGGCAAATGCTTTCTTATGGTTGTACACGCTTGGAGATTGGAGTACAAAGCACATATGAGGATGTCGCTCGAGACACTAACAGAGGGCATACAGTAGCTGCTGTTGCAGATTGTTTTTGCTTGGCAAAAGATGCTGGTTTTAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGATTTGGAAAGTTTTCGGGAATTTTTTGAGAGTCCCTTGTTTAGAGCGGATGGACTTAAAATATACCCTACACTTGTAATACGTGGAACTGGGCTTTACGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCTCCTGAGCAACTGGTGGACATCGTAGCAAGGATCCTCGCCATGGTACCCCCTTGGACCCGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACTTCCAGGGTGGAGAAAGGTAATCTAAGGGAGCTAGCTTTGGCTCGGATGGAAGACCTTGGCTTGAAATGTCGTGATGTTCGGACCCGAGAAGCTGGAATCCAGGACATTCACCACAAAATCAAGCCTGAAGAGGTGGAGCTTGTGCGTTGTGATTATACGGCAAATGAAGGTTGGGAAACATTTCCGTCATACGAAGATACTCGACAGGATATTCTTGTTGGTTTGCTGCGTCTGCGAAAATGTGGTCGGAATACTACTTGTCCTGAACTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCCGTTCCCGTCCATGGCCGGGATGCTGACAAGCTGCAACACCAGGGTTATGGTACACTATTAATGGAGGAGGCAGAAGTAATTGTCCGCAGGGAACATAGATCAACAAAAATAGCTGTAATTTCGGGAGTAGGCACACGTCGTTATTACAGGAAACTGGGTTATGAGCTTGAAGGGCCTTACATGGTGAAATATCTATCGTGA 1692 0.4811 MAAAAVAEPRKAPRPGKGGFEAHGLSEEEARVRAIAEIVNSMVELSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPETEKEALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRASYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGQTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSRVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHKIKPEEVELVRCDYTANEGWETFPSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAEVIVRREHRSTKIAVISGVGTRRYYRKLGYELEGPYMVKYLS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1010 563 FunFam Elongator complex protein 3 411 563 - -
Lele20g1010 563 Pfam Radical SAM superfamily 123 317 IPR007197 GO:0003824|GO:0051536
Lele20g1010 563 Gene3D - 414 563 - -
Lele20g1010 563 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Lele20g1010 563 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Lele20g1010 563 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Lele20g1010 563 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 455 559 IPR016181 -
Lele20g1010 563 MobiDBLite consensus disorder prediction 1 24 - -
Lele20g1010 563 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
Lele20g1010 563 SUPERFAMILY Radical SAM enzymes 135 374 - -
Lele20g1010 563 CDD Radical_SAM 112 359 - -
Lele20g1010 563 PIRSF HAT_Elp3 20 563 IPR034687 -
Lele20g1010 563 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 50 562 IPR034687 -
Lele20g1010 563 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 17 562 IPR039661 -
Lele20g1010 563 SFLD elongater protein-like 53 562 - -
Lele20g1010 563 SFLD ELP3-like 53 562 IPR034687 -
Lele20g1010 563 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 563 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1010 Lele-ChrLele20 16019019 16024043 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele20g1010 Radical_SAM 4.9e-17 CL0036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1118 17 21468471 21474272 Lele20g1010 20 16019019 16024043 hybridization
Lele18g0422 18 2472566 2478392 Lele20g1010 20 16019019 16024043 hybridization