Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1006 ATGGATCCCTCTGAATCCGATTTAACAGCTGTTTCGAACTCCATCAAAGACCCATTATTGGGCATTGAGTTAGCTTTTCCCCCCCCTAGTTCCCATCACCATCCTGAAACGTCAGATCTCAATCCCAGGGATGAGACTGATGCCCTTCAGGAAGCCCTGCAGGACAAGTTGGATTTGAAGGATAAGGATGAAGGGGTCGAAGAGGAAAAGGAGAAGAAAGATTCCGAATTCGATGATGGTAAAGAAGTAAGTGGTATAGCTGATGCCGGAGAATCTGAGAAGGAACAAGTTTTTGATGAAGTTAACCAGAATTGGAATGGAAATGGGGACGATGGTTGGGGGGAGAATGTGAACGAGAGCGAGAATTATAATTTTGGTATAGATAATGTAACTTTCGGTGATGAAGTGGAGAAGAACGATCAGGAAAGCAGCGGTAGAGCACTCCAGTATCCTGTGAGGCCCGAAGCTGAAGATTGCGCGTTCTATCTCAAGACTGGAACTTGCAAGTTTGGGTTCAACTGCAAGTTCAATCACCCTCTTAGGAGGAAAATCCAGGTTGTTAAGGAGAAACTTGAAAGAGAAGAATCAGGAGAAAGATCAGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGAAAATGTTCTGCAACTGCAACCACTATTTTGGAACTTAACTTTCTTGGCCTGCCGATTCGTCTGGGAGAGAAAGAGTGCCCATATTATATGCGTACTGGCTCTTGTAAGTTTGGCGCAAACTGCAAATTCAATCATCCTGATCCTACTGTTGTTGGAGGAAGTGAACCTCCTTCAACATATGCTAATGGCGGGGCTGTTCCTTTACAAGGTGTATCGCAGCCAAACATACCCTCTTGGTCTTCTCCAAGAACATTAAATGAAACTGCTCCTTTTGTGCCAGTGGTGATTCCACCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCCCTCTACCTAACTGCGAGGACTATGCACCCACCATCTACATACGTTGTGAACAACCCAGCTTTTGAATCAAATGTCTATATGCATCATCCTCCAAAGCAGACGCAGGTTGATGAGTTTCCAGAAAGGCCTGGTGAACCAGAGTGCAGTTACTACTTAAAAACTGGGCATTGCAAATTCAAATCCAACTGTAAATTTCACCATCCAAAGAACCGTATTGCAAGACCTCCATGCACCCTAAGTGACAAGGGTCTGCCTTTGAGACCTGATCAGGGTGTGTGCTCGCACTATAGCCGCTATGGAATATGCAAGTATGGGCCATCGTGTAAGTTTGACCACCCAACGAACCTATTGCCGTCAAACATGCCTGGACTTGATAAGGAATCTGCTAGTGTGGAGGTGGCTGAGATGACTGGAAGTGGAGGTTCAGGTGATTCCCCAATTAGGCAGACTGTGTAA 1482 0.4521 MDPSESDLTAVSNSIKDPLLGIELAFPPPSSHHHPETSDLNPRDETDALQEALQDKLDLKDKDEGVEEEKEKKDSEFDDGKEVSGIADAGESEKEQVFDEVNQNWNGNGDDGWGENVNESENYNFGIDNVTFGDEVEKNDQESSGRALQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKIQVVKEKLEREESGERSGQTECKYYLKSGGCKYGKACKFNHTRGKCSATATTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTVVGGSEPPSTYANGGAVPLQGVSQPNIPSWSSPRTLNETAPFVPVVIPPVQGVSPQSSDWNGYQAPLYLTARTMHPPSTYVVNNPAFESNVYMHHPPKQTQVDEFPERPGEPECSYYLKTGHCKFKSNCKFHHPKNRIARPPCTLSDKGLPLRPDQGVCSHYSRYGICKYGPSCKFDHPTNLLPSNMPGLDKESASVEVAEMTGSGGSGDSPIRQTV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1006 493 SMART c3hfinal6 431 456 IPR000571 GO:0046872
Lele20g1006 493 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Lele20g1006 493 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Lele20g1006 493 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Lele20g1006 493 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Lele20g1006 493 SUPERFAMILY CCCH zinc finger 203 228 IPR036855 GO:0046872
Lele20g1006 493 MobiDBLite consensus disorder prediction 36 96 - -
Lele20g1006 493 MobiDBLite consensus disorder prediction 1 96 - -
Lele20g1006 493 Gene3D - 363 422 - -
Lele20g1006 493 Gene3D - 429 478 - -
Lele20g1006 493 SUPERFAMILY CCCH zinc finger 427 455 IPR036855 GO:0046872
Lele20g1006 493 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
Lele20g1006 493 SUPERFAMILY CCCH zinc finger 151 181 IPR036855 GO:0046872
Lele20g1006 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 455 IPR000571 GO:0046872
Lele20g1006 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 386 411 IPR000571 GO:0046872
Lele20g1006 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 224 IPR000571 GO:0046872
Lele20g1006 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 273 IPR000571 GO:0046872
Lele20g1006 493 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Lele20g1006 493 SUPERFAMILY CCCH zinc finger 248 275 IPR036855 GO:0046872
Lele20g1006 493 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Lele20g1006 493 Gene3D - 189 277 - -
Lele20g1006 493 PANTHER PROTEIN PHOSPHATASE RELATED 25 464 - -
Lele20g1006 493 SUPERFAMILY CCCH zinc finger 389 413 IPR036855 GO:0046872
Lele20g1006 493 Gene3D - 115 188 - -
Lele20g1006 493 Coils Coil 49 69 - -
Lele20g1006 493 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Lele20g1006 493 ProSiteProfiles Zinc finger C3H1-type profile. 429 457 IPR000571 GO:0046872
Lele20g1006 493 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1006 Lele-ChrLele20 16000723 16003534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1006 377 482 C2H2 Transcription Factor Family AT3G02830 38.393 5.24e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele20g1006 zf-CCCH 1.5e-08 CL0537