Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1005 ATGGATGCTGAAAGATCTCTAGATCGGGAGCAGCTTTCATGGGCTGGAAATGAGATGGCGTCTATAATAAGGGATGGTGATTCATCCTTGGTTGAGCTTCCTGTAGCATGGGCTGGGCTTGCCATGGTTCACAAGGCCCAGCATGAAATCACAGCTGCTTTTGAAACTGAACAGCATGACCTGATGAAAGTTGAAGAGCATGCTGTTTGCATTTTAAAACAGGCTATAGCAGAAGATGCCAGTGATGCTGTGCCGTGGCACCAACTCGGTCTTCATGATCTGTGTACTCGACAATTCAAAACATCTCAAAGGTACCTCAAAGCTGCTGTTGCCCGTGATAAGAATAGCAGCTATGCATGGTCAAATCTAGGTGTTTCACTTCAACTATCAGAAGAACCATCAAAAGCTGAAGAAGTATATAAGCAGGCCTTAGCACTGGCGACAACAGAACAAGCGCATTCTATATTATCCAACCTGGGGAATCTCTATCGCCAGCAGAAACAATATCAACGTGCCAAGGCAATGTTTACAAAGTCACTTGAACTACAACCTGGCTACGCTCCTGCATATAACAATCTGGGTCTTGTTTTTGTTGCTGAGGGTCTGTGGGAAGAGGCCAAGTATTGTTTTGACAAGGCCCTCCAATCAGATCCATTACTGGATGCCGCAAAGTCTAACGGGATTAAGGCGGTCACCATTGCGCGATTCTCAATCCAAAAAAATGGGATAGAAATTGCTATTGAAATGAAACGTGTGCAAGAAGATGAGGAGGAGGAAGGTTCAGCTGCTCTGGCTTCAGAGCCCAACGCAGATGTATTTCCATGGCTGAAATCTCTGCCTCTCGCTCCAGAGTACCATCCAACTTTGGCTGAGTTCCAAGATCCAATTGCATACATTTTTAAGATCGAGAAGGAGGCCTCCAAGTATGGAATCTGCAAAATCGTTCCCCCCGTGCCGCCTTCTCCGAAGAAGAGTGCAATTGCGAATCTTAATCGCTCTTTGGCGGCCCGAGCTGCTTCCTCTGACTCTTCTGGTTCGAAAGCTCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGCTTCTGCCCTCGGAGACCACGGCCCGTGCAGCGTCCTGTTTGGGAAAGTGGCGAATACTACACATTTCAGGAATTCGAGGCCAAGGCCAAGGCTTTTGAGAAGAGTTACTTGAAAAAATGTGCTAAGAAAGGTGCGTTTTCACCCCTGGAAATAGAAACGCTTTATTGGAAGGCGACAGTGGATAAACCCTTCTCAGTTGAGTATGCAAACGACATACCTGGTTCTGCTTTTGTTCCCCTGAATGGGAGAAAATGCAGAGAGACAGGGGAGAGTGTTAGCGTTGGCGACACTGCATGGAACATGAGAGGTGTGTCAAGGGAAAACCGCTCTTTGTTGAGGTTCATGAAGGAGGAGATTCCTGGAGTCACATCGCCAATGGTGTACGTAGCTATGTTGTTCAGCTGGTTTGCTTGGCACGTTGAGGATCATGACTTGCATAGCTTGAATTACCTACACATGGGGTCAGGCAAGACGTGGTATGGCGTGCCAAGAGATGCGGCAGTAGCATTTGAAGAAGTGGTCAGAGTTGATGGTTATGGAGGAGAATTAAACCCTCTTGTGACTTTTTCTACTATGGGTCAGAAAACCACAGTGATATCACCTGAAGTATTTATTAGTGCTGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACGTTTCCAAGAGCCTATCATACAGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAGTGGTTGAGGGTTGCGAAAGATGCTGCTATTCGAAGGGCATCAATAAACTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTAGCTCTAGCTTTGTGTACTAGAATTCCTGAAAGAATCAGTGCTGAGCCACAGAGTTCTCGACTTAAAGATAAGAGGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTATACAGGATGTGCTGCAAACCAATGAGCTGCTTCATGTGCTTGGGAAAGGATCTGCTATAGTAATTCTTCCTCGGAGCTCTTCAGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCTCAGCAAGTAAAAGTGAACCCTCGGTATACCCTCAGTGCATGCAAGTCTGAAGGAGTAAATTCCTCAATAGGTTTTGTTTCTGATGACTTGGCTTACAACAGGAATCATGGAATCAAACAAGCCAATGGTTTCTATTCAGTAAAAGAAAAGTTTGCTTCATTGTGTGAAAGGAACAGGATTTCCTCGTTATGTGTAAATGATAAATGCACCTCAAGTTCTAAGACGCTGCAAAGAGACACTGGAAAAGAAACAAATCAAAGAGATGGCTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATGTTAAGCTTTGCCTGTGTTGCTATTGTAAAGCCTAGAGAACCAGCTGCTAGATACCTTATGTCAGCTGATTGTTGCTTCTTTAATGATTGGGTTGAATGCAAATGCTGTGCCTGTAGGCTATTGTCTGGCTCTGCATTGGCTTGGGTTGGATGGACAGAAAAGAATGCCCAAAATGGTGCATATGGTGTTCCTGTCCAGGTTGAACCCCACATGCAGATTGCAGGTCAAGACTTGAAGGAGGCTTCAAATACTGGAAAACAAAAGGAAACTACAGCTCTTGGCTTATTGGCTTCCACATATGGAAATTCTTCTGACTCTGAGGAAGACCAGGTTGACCCATATACTGAATTTGATGATGATGAATCAAATGTTATAAACTATCCATCAGGAAGTAGACCTCAAAGGGAGATATTTGGTTTGCCCCATGTGAGTCATCAGACTTTTGATTACTCTGTTGAGACGACAGATTATAGAATCACTTCAGGGGTTGCATTTAGAAGTACAGGGGCATTGCCTCATTCCTACTTGAATTGTTCCCATGATGTTCAAGATGCCGAAACATTGAGGTGCAAGGCTAGAGTTCCCATTGATACTAAAAATGTTCCATTCGTGCCACAATCTGATGAAGACTCGTCTAGAATGCATATCTTCTGTCTAGAGCATGCTGCAGAAGTCGAACAGCAACTTCATCCAATGGGAGGATCACACATATTACTCCTTTGTCATCCAGGTTATCCCAAGATAGAGGCTGAAGCAAAACTTGTGGCCGAAGAACTGGGGAATGATTATGCTTGGAAGAATATTGAATACAGGCATGCTACTGAAGAGGATGAGGAGAGGATTGAAGCATCCCTTGATAGTGAGGAAGCTGTTCCTGGTAATGGAGATTGGGCTGTAAAACTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCTTTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGCTGTAGCTCTCCAGCAAACTCAGCTACAGAGCCCAAGGTTTATCAGAGGAGGGCCAACAAGCAGAAGAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCTCTTTTAGCAAAAAGAGACTCTGAAGATGTTGAGGATGCAAAAAGATTACATGGGTGTTCATTACCCGATGAGCAAATTGAGAGGTCAGAAAGTAGCCACAGAAACAATATTACCAATAGAAAATCTGTTAAGAAAATGAAAATGACTGTAGAAGACAGGGGAGTCAGGGAAGCAGCTTTTGCTGAGAGAGATGTGTTTTCAGATAATTCATTTGAAGATAAACCCAACCCAAGGCAAAGGAGGAGTTTTAGAAATAAGCAAGCCAAATATAGTGTACGAGATGGTGATGCTTTGGATGGGGAATATTCTGCACTGGCACGTCATGGAAAACATGCAAGTAACAAAACAATATGCATTGAAATTAATATGGTCTCAGATGATTCGCTGGATGATAATTCTCATATGCCGCACAGGAGAAATGTTGTCAATGAAGCTAAATCCTTTGATGATGGTAATGTGGTTTCAGATGATGAAATGGAATATGATTCTGATTGGCAGCAGAGGGGTGAATCTAGCAGCAAGCGAGTCGAAGATGAAGAGAGAGATGCAATGTCAGATGATTCATTGGATGGATGTTCTCTTCAGCTGCATGGGAACACTTGTAAACGCAAGCAAGCCAAATGCATAGCCGAAGATGTAACTTCTGATAGTCCTATGGAGGATCATTTTCAGAAGAGGCGATTCAGTATTTCCAAGAGCAGACAAACCAAATGCTTTTCTGGGGAAGATTTATTAACATCTGATGACCAACAGGAGCATGGCACTCAGAAGCAAAAGCAAAGGATTCCCAAAAGCAGGCAAGCGAGATACCTTGCTGGAAAGGATACTATATCTAATGAGCGACTTGAAAATACTTTTCGTAAGTATCAAAGAAGGACTTCTAAAAGCAGAAAAGGCCTAATTAAGGAAGATGTAATGTCTGATGACCATTTAGAGCATCAAATTCAGAAGAAGCAAAAAAGTTCTCGTAGGAGCAGGCAAAGGAAATGCATTAATAGAGGAGTTTTGGGTGTCTCCATTGAAAATGATCGTCTGCTGCAAAACACACCTAAAAGGAAGCAAGTTAAATGCATGGATGTAGATGACAATAATTCGGATGATCAAGTGGAGGGTGATTCTCCCCAGCAGCACAGGAGGCTTCTTCAAAGTAATCTACTCAAATCAGAGACACTGAGGCAAATTAAACATGCTAAACCTCGCAGTATGAAAAGTCAGACATCCCAGTCTGTTAAACACAGTGCTTGGCTGCTTGTTAAAGCGAAGGCTTCTCAGCAAAAGAAGCAGGGTCCATGTGTGCGAAATAATCAATCCAATAGCTACAGAGAGTTTAGTTTACATATTGAAGAAGAGGAAGAAGGCGGACCTAGCACACGCCTTAGGAAGAGAGCCCCAAAAGTTGATGAGTCTGAGGCAAGACCAAAAGAAAAGCAAACTAAAAGGAAAAAGGTGAAGCATGCCATGCCTGCGAAGGTTTCGACTGGCCATGCTAAATTAAAGGATAAGCAGACAGATGCATATTATCAATGTGACATTGAGGGCTGCACCATGAGTTTTGGGTCCAAACAGGAGCTTGTGCTGCATAAGAGAAACACCTGTCCAGTAAAGGATTGTGGAAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGTCGAGTCCACATGGATGACCGGCCCCTGAAGTGTCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCATGGGCACGCACTGAACATATTCGTGTTCACACCGGAGCTCGTCCATATGCTTGTGCTGAGCCTGGCTGTGGGCAAACATTTAGGTTTGTGTCCGACTTCAGTCGCCATAAGCGAAAGACTGGCCATTCAACAAAGAATAGTCGCCAATAA 5448 0.4363 MDAERSLDREQLSWAGNEMASIIRDGDSSLVELPVAWAGLAMVHKAQHEITAAFETEQHDLMKVEEHAVCILKQAIAEDASDAVPWHQLGLHDLCTRQFKTSQRYLKAAVARDKNSSYAWSNLGVSLQLSEEPSKAEEVYKQALALATTEQAHSILSNLGNLYRQQKQYQRAKAMFTKSLELQPGYAPAYNNLGLVFVAEGLWEEAKYCFDKALQSDPLLDAAKSNGIKAVTIARFSIQKNGIEIAIEMKRVQEDEEEEGSAALASEPNADVFPWLKSLPLAPEYHPTLAEFQDPIAYIFKIEKEASKYGICKIVPPVPPSPKKSAIANLNRSLAARAASSDSSGSKAQPTFTTRQQQIGFCPRRPRPVQRPVWESGEYYTFQEFEAKAKAFEKSYLKKCAKKGAFSPLEIETLYWKATVDKPFSVEYANDIPGSAFVPLNGRKCRETGESVSVGDTAWNMRGVSRENRSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVVRVDGYGGELNPLVTFSTMGQKTTVISPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCTRIPERISAEPQSSRLKDKRKGEGETVIKELFIQDVLQTNELLHVLGKGSAIVILPRSSSDISVCSKLRVGSQQVKVNPRYTLSACKSEGVNSSIGFVSDDLAYNRNHGIKQANGFYSVKEKFASLCERNRISSLCVNDKCTSSSKTLQRDTGKETNQRDGLSDQRLFSCVTCGMLSFACVAIVKPREPAARYLMSADCCFFNDWVECKCCACRLLSGSALAWVGWTEKNAQNGAYGVPVQVEPHMQIAGQDLKEASNTGKQKETTALGLLASTYGNSSDSEEDQVDPYTEFDDDESNVINYPSGSRPQREIFGLPHVSHQTFDYSVETTDYRITSGVAFRSTGALPHSYLNCSHDVQDAETLRCKARVPIDTKNVPFVPQSDEDSSRMHIFCLEHAAEVEQQLHPMGGSHILLLCHPGYPKIEAEAKLVAEELGNDYAWKNIEYRHATEEDEERIEASLDSEEAVPGNGDWAVKLGINLFYSANLSRSPFYSKQMPYNSVIYNAFGCSSPANSATEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDAKRLHGCSLPDEQIERSESSHRNNITNRKSVKKMKMTVEDRGVREAAFAERDVFSDNSFEDKPNPRQRRSFRNKQAKYSVRDGDALDGEYSALARHGKHASNKTICIEINMVSDDSLDDNSHMPHRRNVVNEAKSFDDGNVVSDDEMEYDSDWQQRGESSSKRVEDEERDAMSDDSLDGCSLQLHGNTCKRKQAKCIAEDVTSDSPMEDHFQKRRFSISKSRQTKCFSGEDLLTSDDQQEHGTQKQKQRIPKSRQARYLAGKDTISNERLENTFRKYQRRTSKSRKGLIKEDVMSDDHLEHQIQKKQKSSRRSRQRKCINRGVLGVSIENDRLLQNTPKRKQVKCMDVDDNNSDDQVEGDSPQQHRRLLQSNLLKSETLRQIKHAKPRSMKSQTSQSVKHSAWLLVKAKASQQKKQGPCVRNNQSNSYREFSLHIEEEEEGGPSTRLRKRAPKVDESEARPKEKQTKRKKVKHAMPAKVSTGHAKLKDKQTDAYYQCDIEGCTMSFGSKQELVLHKRNTCPVKDCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHSTKNSRQ 1815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1005 1815 SMART c2h2final6 1699 1721 IPR013087 -
Lele20g1005 1815 SMART c2h2final6 1752 1776 IPR013087 -
Lele20g1005 1815 SMART c2h2final6 1782 1808 IPR013087 -
Lele20g1005 1815 SMART c2h2final6 1722 1746 IPR013087 -
Lele20g1005 1815 SMART cupin_9 453 622 IPR003347 -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1638 1668 - -
Lele20g1005 1815 ProSiteProfiles TPR repeat profile. 153 186 IPR019734 GO:0005515
Lele20g1005 1815 SUPERFAMILY beta-beta-alpha zinc fingers 1738 1780 IPR036236 -
Lele20g1005 1815 Gene3D Tetratricopeptide repeat domain 15 254 IPR011990 GO:0005515
Lele20g1005 1815 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Lele20g1005 1815 Pfam Tetratricopeptide repeat 153 215 - -
Lele20g1005 1815 ProSiteProfiles JmjC domain profile. 456 622 IPR003347 -
Lele20g1005 1815 Gene3D Classic Zinc Finger 1720 1806 - -
Lele20g1005 1815 ProSitePatterns Zinc finger C2H2 type domain signature. 1724 1746 IPR013087 -
Lele20g1005 1815 SUPERFAMILY Clavaminate synthase-like 470 636 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1353 1374 - -
Lele20g1005 1815 ProSitePatterns Zinc finger C2H2 type domain signature. 1754 1776 IPR013087 -
Lele20g1005 1815 FunFam Probable lysine-specific demethylase ELF6 275 626 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1480 1510 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1550 1569 - -
Lele20g1005 1815 SUPERFAMILY beta-beta-alpha zinc fingers 1770 1804 IPR036236 -
Lele20g1005 1815 ProSiteProfiles Zinc finger C2H2 type domain profile. 1782 1813 IPR013087 -
Lele20g1005 1815 ProSiteProfiles JmjN domain profile. 282 323 IPR003349 -
Lele20g1005 1815 ProSiteProfiles Zinc finger C2H2 type domain profile. 1752 1781 IPR013087 -
Lele20g1005 1815 PANTHER LYSINE-SPECIFIC DEMETHYLASE 274 1453 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1260 1281 - -
Lele20g1005 1815 Gene3D Cupin 275 626 - -
Lele20g1005 1815 SUPERFAMILY TPR-like 65 218 IPR011990 GO:0005515
Lele20g1005 1815 SMART JmjN_1 281 322 IPR003349 -
Lele20g1005 1815 ProSiteProfiles Zinc finger C2H2 type domain profile. 1722 1751 IPR013087 -
Lele20g1005 1815 Pfam JmjC domain, hydroxylase 486 604 IPR003347 -
Lele20g1005 1815 ProSiteProfiles TPR repeat region circular profile. 187 218 - -
Lele20g1005 1815 Pfam jmjN domain 283 316 IPR003349 -
Lele20g1005 1815 FunFam Probable lysine-specific demethylase ELF6 1779 1808 - -
Lele20g1005 1815 FunFam Probable lysine-specific demethylase ELF6 1749 1778 - -
Lele20g1005 1815 ProSitePatterns Zinc finger C2H2 type domain signature. 1784 1808 IPR013087 -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1480 1522 - -
Lele20g1005 1815 SMART tpr_5 187 220 IPR019734 GO:0005515
Lele20g1005 1815 SMART tpr_5 153 186 IPR019734 GO:0005515
Lele20g1005 1815 SMART tpr_5 117 150 IPR019734 GO:0005515
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1638 1688 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 338 358 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1433 1468 - -
Lele20g1005 1815 MobiDBLite consensus disorder prediction 1336 1382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1005 Lele-ChrLele20 15983219 15999238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1005 1584 1813 C2H2 Transcription Factor Family AT3G48430 52.500 8.67e-68 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele20g1005 JmjC 1.1e-34 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1112 17 21426275 21442036 Lele20g1005 20 15983219 15999238 hybridization
Lele18g0430 18 2520484 2526335 Lele20g1005 20 15983219 15999238 hybridization