Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g1002 ATGACAATCTCTTCCCTCTCTCTGCTCTTCTTTCTCTCCTTTCTTCTCTGCATAACCCTCATTTCCTCCAGAGTACTCCCCCAAAACCCAGAATTAGTAGTACAAGAAGTTGACAGGAAGATAAATGCTTCTATCGCTAGGAGGAACTTGGGGTACCTATCCTGTGGAACTGGCAACCCCATTGATGATTGCTGGAGGTGTGACCCCGACTGGGAGAAGAACAGGCAGAAGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCTGTTGGAGGCAAGGACGGTCAGATTTATGTGGTGACGGACTCCGGCGACGACGACCCGGTGAACCCGAAGCCGGGGACTCTCCGGTACGCCGTGATCCAAGACGAGCCGTTGTGGATCATATTTGCCCGAGACATGGTGATCCAGCTGAAAGAAGAGCTGATAATGAACTCGTTCAAGACCATCGACGGCAGAGGCTCGAGCGTGCATATTGCGGGTGGTCCATGCATTACGATCCAATGTAGGCATGGATATTTCCATGTTGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGAAACAGATTTGTAGCACCCGATGACAGATTCAGCAAAGAGGTGACGAAGCATGAGGATGCGGCGGAGAGCGAGTGGAAGAACTGGAACTGGAGGTCGGAAGGGGACTTGTTGGTAAACGGTGCGTTTTTTACGGCGACAGGAGCCGGAGCGTCGTCAAGCTATGCGAGGGCTTCGAGTCTGAGTGCGAGGCCATCTTCACTTGTGGGTACGATCACCGGAGGCGCCGGTACACTGAGCTGCCGGAAAGGAGAAAGCATGAAGGAAGCGGCAAGAACGCATTCAGTCTCTTCTGGAGAACCCCACACAGACATTCGAACCCAGAAGGAGCACTTGCCTCCCTTCTTGTGGGGAGTGCGGAGCATGGGTCCCACCATGATCAGCAGCTTTGAATTTGAGTATAAAGATACAGAGAGAGACATGGAGATTATTAGAATGAAGGCATGGCATCAAAAAATGACCTCCATCTTACCAACTGAGGAGTCTAGGGTTAGTAGATCTTATAAGTCAAAAGGCGTACCATGTTCCAAGGGCATGCTACTAAACGCGGCTCCAGCAAGAAAATCCCTTTATTTGAATTTTGCATTAGCGGATCCACAAACTCAGGGGCCTATTGGGCTGTTGGGCCTCAAGTATTGTCTTGTGGTGGCCCAACAAATAGTTGTAATTGCTGCAGCAGAGAGTTTAGGATATGTTTGTACCAAAAAGAAAAGAGTTCAGGATATGTTTGGTGGGCTACAGCCTACAAGTGCTAAAGGTCAAGCTCCAGTCTGGCTATGCGCGAACGAGATGAGATAA 1398 0.4993 MTISSLSLLFFLSFLLCITLISSRVLPQNPELVVQEVDRKINASIARRNLGYLSCGTGNPIDDCWRCDPDWEKNRQKLADCAIGFGKNAVGGKDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGSSVHIAGGPCITIQCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAESEWKNWNWRSEGDLLVNGAFFTATGAGASSSYARASSLSARPSSLVGTITGGAGTLSCRKGESMKEAARTHSVSSGEPHTDIRTQKEHLPPFLWGVRSMGPTMISSFEFEYKDTERDMEIIRMKAWHQKMTSILPTEESRVSRSYKSKGVPCSKGMLLNAAPARKSLYLNFALADPQTQGPIGLLGLKYCLVVAQQIVVIAAAESLGYVCTKKKRVQDMFGGLQPTSAKGQAPVWLCANEMR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g1002 465 PANTHER PECTATE LYASE 18-RELATED 28 168 IPR045032 GO:0030570
Lele20g1002 465 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Lele20g1002 465 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Lele20g1002 465 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Lele20g1002 465 MobiDBLite consensus disorder prediction 286 309 - -
Lele20g1002 465 SUPERFAMILY Pectin lyase-like 79 284 IPR011050 -
Lele20g1002 465 Gene3D - 58 168 IPR012334 -
Lele20g1002 465 Gene3D - 169 280 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g1002 Lele-ChrLele20 15960250 15964136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g1002 168 284 Polysaccharide Lyase AT5G63180 79.832 1.78e-53 183