LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele20g1001	ATGGCCGTCAACACCATCCCGCCGACCGATGTTCCCGGTATTTCTCCCATCGCTGGCATCGACTACCTGAGCTGCCGAGTCTTACCCGAACCTGATGTTTTTATTCACACATCCAGTGGCGATCGCATTCCCGCTCACACAAGCATTCTGGCTTCAGTGTCTCCGGTTTTGGAGAATGTCATAGATCAGCCACGCAGACATCGGAGCTCCGAGAGAATAATTCAAATACACGGTGTTCCTTGCGAAGCCGTCACTGCTTTTCTCGGCTTCCTTTATTGTTCCAGGTGCACGGATGAGCAGATGGAGAAATATGGGATTCATCTGCTCGCATTGTCTCACGTGTATTTGGTGCCACAACTGAAGCAGAGGTGCATCAAGGTTCTTGCCGAACGGTTAACGATCGAGTATGTGGTGGATTTGCTCCAACTTGCGAGGCTCTGCGACGCGCCAGATCTTTACATCAAGTGTATGAAGCTACTCACCAATCACTTCAAATCTGTGGAAGCAACAGAGGGCTGGAAATTCTTGCAGAAGCATGATCCATGGCTTGAGCTGGACATCCTCCAATTCATGGACGAGGACGAATCGGTAAATTCCAAGTTTCCGTTAGTTCAATTGAATATGTATAAATCAATCATAATTTCTCTTAGGCGAATTTCCAAAATTAAAGTGAGTGATCCAATGGGAATGGAACAGAGGAAGAAGAGATCAAGGAAGCAGAGGGAAGAGCTGAGGGTGTACGCGGAGCTGAGCGAGGCGATGGAGTGTCTGGAACACATATGCACAGAAGGGTGCACCGACGTTGGGCCTTACGGCGTGGAGCTCCGGAAAGAGAGGAGGCCGTGCGGCAAATACGCCACGTGTCATGGTATTCAGCTCTTAATCATGCACTTCGCTACGTGTAATAAGAGGATGAAGTGTGGATGCTTACGCTGCAAGCGAATGTGGCAACTCTTCCGACTTCATTCCAACATTTGCCAGCAAACCCATTCTTGCAAGGTTCCTCTTTGCAGGAAAATGCAGCAAGAGAAAAGGAAAGATGATCCAACATGGAAACTGCTCGCGAGAAAAGTGGCCTCTGCTAGAATCATGTCTACACTCTCTTTGCCAAAGAGGAAGAGAGATGATGAAATCGCAATAAGCATGAACAATTATGGGATTGGAAGCTTCAAATTAAAATAA	1182	0.4763	MAVNTIPPTDVPGISPIAGIDYLSCRVLPEPDVFIHTSSGDRIPAHTSILASVSPVLENVIDQPRRHRSSERIIQIHGVPCEAVTAFLGFLYCSRCTDEQMEKYGIHLLALSHVYLVPQLKQRCIKVLAERLTIEYVVDLLQLARLCDAPDLYIKCMKLLTNHFKSVEATEGWKFLQKHDPWLELDILQFMDEDESVNSKFPLVQLNMYKSIIISLRRISKIKVSDPMGMEQRKKRSRKQREELRVYAELSEAMECLEHICTEGCTDVGPYGVELRKERRPCGKYATCHGIQLLIMHFATCNKRMKCGCLRCKRMWQLFRLHSNICQQTHSCKVPLCRKMQQEKRKDDPTWKLLARKVASARIMSTLSLPKRKRDDEIAISMNNYGIGSFKLK	393

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele20g1001	393	SMART	TAZ_2	244	338	IPR000197	-
	Lele20g1001	393	FunFam	BTB/POZ and TAZ domain-containing protein 2	241	363	-	-
	Lele20g1001	393	PANTHER	BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED	30	374	IPR044513	-
	Lele20g1001	393	SUPERFAMILY	TAZ domain	244	342	IPR035898	-
	Lele20g1001	393	SMART	BTB_4	31	132	IPR000210	GO:0005515
	Lele20g1001	393	Pfam	TAZ zinc finger	251	337	IPR000197	-
	Lele20g1001	393	Gene3D	TAZ domain	231	364	IPR035898	-
	Lele20g1001	393	ProSiteProfiles	BTB domain profile.	31	100	IPR000210	GO:0005515
	Lele20g1001	393	SUPERFAMILY	POZ domain	32	131	IPR011333	-
	Lele20g1001	393	CDD	BACK	133	176	-	-
	Lele20g1001	393	Pfam	BTB/POZ domain	31	130	IPR000210	GO:0005515
	Lele20g1001	393	Gene3D	-	133	202	-	-
	Lele20g1001	393	Gene3D	Potassium Channel Kv1.1; Chain A	30	132	IPR011333	-
	Lele20g1001	393	FunFam	BTB/POZ and TAZ domain-containing protein 2	133	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele20g1001	Lele-ChrLele20	15954438	15957376	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TAZ	Lele20g1001		BTB	1.4e-12	CL0033

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1725	21	25109630	25112428	Lele20g1001	20	15954438	15957376	CCT
	Lele22g1700	22	22455403	22457833	Lele20g1001	20	15954438	15957376	CCT
	Lele23g0286	23	1956125	1958717	Lele20g1001	20	15954438	15957376	CCT
	Lele24g1669	24	22134929	22136841	Lele20g1001	20	15954438	15957376	CCT
	Lele17g1109	17	21400568	21403635	Lele20g1001	20	15954438	15957376	hybridization
	Lele18g0432	18	2545814	2547631	Lele20g1001	20	15954438	15957376	hybridization