Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0991 ATGTTTTGTACAAACTATGTGCCGGGTTCTTCTACCTCTCTCCCTCACTCTGCCACCGTCACCCTTCTGTTTCTGTCCCTTATCCTCAACCTCCTTCCTTCATCTGTAGTACAGACTTCTCCGACAATGGCAGAAGCATGCCTTCTTTCTTTGCCCTCACTATTCTGCAACAAAACCAAACATCCCCATTCCTCCACATTTCCTTCTAAACCCCTTAAGCTTCAACTGTCGTGCTCCAACTCTTCACTCTTTTTACCTTCTACATCTCTCATCGGGAGAACTCATTCTTCCTCTATATTGACATTTGTAGCACAGACATCGGATGCGGCTCAGCAAGAAGCTGACGACGCAGTTGCTGTTGGTGATGAAGAACCCGCGTGGGAAAATCAAGAGGTCGACAATACCGAAGCTGGCGTTTCGGACTGGGAGGCTGAGGGTGGTGAAGAAGGGGAATACGTAGAAGCTTCTGAAGATGCCAAAATCTATGTCGGTAACTTGCCTTATGATGTTGATAGCCAGAAATTGGCTATGCTTTTTGAGCAAGCTGGAACTGTTGAAATTGCCGAGGTGATTTATAACAGGGAGACTGACCGAAGTCGTGGATTCGGATTTGTAACGATGAGCACAGTTGAAGAAGCAGAGATAGCTATCGAAAAGTTCAGCCGCTACGATTTGAATGGAAGACTCCTGACTGTTAATAAGGCTGCTCCAAGAGGATCACGACCTGAACGTCCACCTCGTGCCTTTGAACCTGCTTTCAGAATCCACGTCGGCAACTTGCCGTGGGATGTAGATAATGCTGGCCTGGAGCAAATGTTCAGAGATCAGGGTAAGGTGTTGAATGCTCGGATAGTTTATGACAGAGAGACTGGCCGATCACGTGGCTTTGGCTTCATCACAATGGCCACTGAGACTGAAATGAATAATGCTATTGCTGCTCTCGATGGTCAGAGTGTGGATGGGAGAGCCATCAGAGTGAGTGCTGCTGAGGAAAGGCCCAGGCGTGGCAACTTTTGA 1017 0.4779 MFCTNYVPGSSTSLPHSATVTLLFLSLILNLLPSSVVQTSPTMAEACLLSLPSLFCNKTKHPHSSTFPSKPLKLQLSCSNSSLFLPSTSLIGRTHSSSILTFVAQTSDAAQQEADDAVAVGDEEPAWENQEVDNTEAGVSDWEAEGGEEGEYVEASEDAKIYVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEIAIEKFSRYDLNGRLLTVNKAAPRGSRPERPPRAFEPAFRIHVGNLPWDVDNAGLEQMFRDQGKVLNARIVYDRETGRSRGFGFITMATETEMNNAIAALDGQSVDGRAIRVSAAEERPRRGNF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0991 338 MobiDBLite consensus disorder prediction 125 149 - -
Lele20g0991 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 237 IPR000504 GO:0003723
Lele20g0991 338 FunFam 31 kDa ribonucleoprotein, chloroplastic 243 337 - -
Lele20g0991 338 PANTHER OS02G0815200 PROTEIN 59 333 - -
Lele20g0991 338 Gene3D - 103 241 IPR012677 -
Lele20g0991 338 Gene3D - 242 337 IPR012677 -
Lele20g0991 338 SMART rrm1_1 160 233 IPR000504 GO:0003723
Lele20g0991 338 SMART rrm1_1 254 327 IPR000504 GO:0003723
Lele20g0991 338 FunFam 31 kDa ribonucleoprotein, chloroplastic 104 242 - -
Lele20g0991 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 325 IPR000504 GO:0003723
Lele20g0991 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 230 IPR000504 GO:0003723
Lele20g0991 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 331 IPR000504 GO:0003723
Lele20g0991 338 CDD RRM_HP0827_like 160 237 - -
Lele20g0991 338 SUPERFAMILY RNA-binding domain, RBD 245 336 IPR035979 GO:0003676
Lele20g0991 338 CDD RRM_HP0827_like 254 330 - -
Lele20g0991 338 SUPERFAMILY RNA-binding domain, RBD 157 247 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0991 Lele-ChrLele20 15891056 15893033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0991 157 335 Eukaryotic Initiation Factors Gene Family AT3G16380 32.447 6.98e-20 88.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1097 17 21349604 21351549 Lele20g0991 20 15891056 15893033 hybridization
Lele18g0441 18 2594542 2596568 Lele20g0991 20 15891056 15893033 hybridization