Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0982 ATGCCCGTATCCACTTGCTTCTTCCACTTTCTCATCCTTTCCATTTCAACTTTTTTGAATTCGGTCCTCATTCTCAGTTGCAGAGCCTTTGAGGATTTCGTTCTGGCAATGCGGCAGGATTCGTCCCAACAATACTTTGATGACTCTGAATCTGTAGAGATTGATCCCACCGGGCGATATTACAAGGAAGTTTTAGGGGAGGGAGCTTTCAAGAAGGTATGGTTTGTTTCTTCTAATGACGAAAGATATCGAGCATTCGATGAGTTGGAAGGAATTGAAGTTGCATGGAATCAGATTAAAGTGGATGAACGAATGCAGCATGGCAACATCAACTTCATTACTGAAATATTCACTTCAGGAACATTAGGCCATCATGATCCACCAATTATTCATCGAGATCTCAATTGTGACAACATCTTTGTCAATGGAAATCAGGGTGAGGTGAAAATTGATGACTTGGGATTTGCTGCCATTCTTCAGCAAGCCGATTCAGCTCATGGTGTTATAGGTACTCCAGAGTTTATGGCGCCAGAGCTCTATCAAGAGGAATACAATGAGCTTGTTGACATTTATGCTTTTGTCATGTGCTTGCTAGATTTGGGAGTAAAGCCGGCATCTTTGGCAAAAGTGACAGTTCCTGTGCTGAAGGCATTTATTGGAAAGTGTATTGCCAATGTATCTGAACGATTACCTCCTAAGGATCTCTTGATGGATTCCTTTCTTCATTTAGACCAAGATACAGATGATATAGCAGACACTGCAGTTGGGGTTGCTGGCGAAATGGTTGAGGAGCTTGAGCTTTCTGTTCAAGATCTCTACCAAAGGGTGGGCAGTGGAAGCAGACGTGCCTCTACCACTTTTAGTGGTAGTCTCACATGGGAAAGATTACCTTTAGGTCATAAGTTCTGGTCTGACTTACCCAAAGCAGTAGTCAGAAACTCTTTTTTAAGGCCTGGTGCTTCTAACTTGTCATGTAAAGTGAATGTGGGCACCGAGGAAAGTGATGCTGCCTTAGTTCATCAGCATGCTAAGAAGAACTGTGTTCATGATATGGGATTTCAGGAAAGAAATCTAGGGGGATTGGCGATTTTCGTTCCATTGAGAGAAGGATTACATCTAAGGATTCAAAAGCAACCGAAGAGAACCTCCTAG 1152 0.4262 MPVSTCFFHFLILSISTFLNSVLILSCRAFEDFVLAMRQDSSQQYFDDSESVEIDPTGRYYKEVLGEGAFKKVWFVSSNDERYRAFDELEGIEVAWNQIKVDERMQHGNINFITEIFTSGTLGHHDPPIIHRDLNCDNIFVNGNQGEVKIDDLGFAAILQQADSAHGVIGTPEFMAPELYQEEYNELVDIYAFVMCLLDLGVKPASLAKVTVPVLKAFIGKCIANVSERLPPKDLLMDSFLHLDQDTDDIADTAVGVAGEMVEELELSVQDLYQRVGSGSRRASTTFSGSLTWERLPLGHKFWSDLPKAVVRNSFLRPGASNLSCKVNVGTEESDAALVHQHAKKNCVHDMGFQERNLGGLAIFVPLREGLHLRIQKQPKRTS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0982 383 ProSiteProfiles Protein kinase domain profile. 1 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0982 383 SMART serkin_6 59 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0982 383 Gene3D Transferase(Phosphotransferase) domain 1 128 243 - -
Lele20g0982 383 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 44 105 - -
Lele20g0982 383 SUPERFAMILY Protein kinase-like (PK-like) 62 242 IPR011009 -
Lele20g0982 383 Pfam Protein kinase domain 102 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0982 383 Gene3D Phosphorylase Kinase; domain 1 46 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0982 Lele-ChrLele20 15849828 15852421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0982 33 241 MAP Kinase Kinase Kinase AT5G55560 41.077 1.94e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lele20g0982 Pkinase 7.2e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0451 18 2639225 2641836 Lele20g0982 20 15849828 15852421 hybridization