Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0981 ATGGCCATTTCTTCAGCCACAGCTTCTGCTTCCTCCAAGCTCATATTCTTCCATTCCTCTCCTTCTTCCTCCTCCTCCTCTCTTTCTCTAAACCCCTACAAACTCTCATCCCCTGCATCCCATCTCTCCTCTTCCTTCATTAACCCCTCCACAATCCTCCACCTTTCTCCCTCCTCCACCTCCTCCGCCACCGCTCGCCACCGCTCCTTCACAATCCGAGCTGCTCGTGGCAAGTTCGAGAGGAAGAAACCCCATGTCAATATCGGCACCATTGGCCATGTCGACCACGGGAAGACCACTCTCACTGCTGCCCTCACCATGGCCTTAGCGGCTCTGGGAAACAGTGCCCCAAAGAAGTACGACGAGATTGACGCTGCCCCAGAAGAGCGAGCTCGTGGTATCACCATTAATACTGCCACTGTCGAGTACGAGACTGAGAATCGCCACTACGCCCACGTCGACTGTCCTGGCCACGCCGATTATGTCAAGAACATGATTACCGGTGCTGCTCAGATGGACGGCGCTATTCTTGTCGTTTCCGGCGCCGACGGTCCAATGCCGCAGACTAAGGAGCATATACTTTTGGCTAAGCAAGTGGGTGTCCCGAATATGGTCGTGTTTCTAAACAAGCAAGATCAGGTTGATGACGAGGAGCTTCTGCAGCTTGTGGAATTGGAGGTTCGTGAGCTTCTTTCGTCTTATGAATTCCCTGGTGATGATGTCCCCATTATTTCTGGTTCTGCTCTGTTAGCTCTGGAGGCATTGATGGCGAATCCCGCCATTAAACGAGGAGAAAACACATGGGTCGACAAAATTTACGAACTTATGGATTCTGTGGACAGCTACATCCCAATTCCTCAGCGTCAAACTGATCTTCCTTTCTTGCTGGCTATTGAAGACGTGTTCTCAATCACAGGTCGTGGGACTGTGGCCACGGGCCGTGTCGAGAGAGGTACAATTAAGGTGGGAGACACTGTAGATATTGTTGGTGTAAGGGAAACTAGAAACACAACCGTGACCGGGGTAGAAATGTTCCAGAAAATTCTTGATGATGCCATGGCTGGGGATAACGTGGGGTTGTTGTTGAGAGGTATCCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACTCCGCACACCAAGTTCGAAGCAATTGTTTATGTCCTGAAGAAGGAAGAAGGAGGAAGGCACTCACCATTCTTTGCTGGTTACAGGCCACAGTTCTACATGAGGACCACTGATGTAACTGGGAAAGTGACAGCCATAATGAATGATAAGGATGAAGAATCAAAGATGGTTATGCCTGGAGATCGTGTGAAGATGGTTGTTGAACTTATAGTGCCAGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTGATTCAATCCATCATCGAGTGA 1449 0.4969 MAISSATASASSKLIFFHSSPSSSSSSLSLNPYKLSSPASHLSSSFINPSTILHLSPSSTSSATARHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPAIKRGENTWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0981 482 FunFam Elongation factor Tu 421 481 - -
Lele20g0981 482 Gene3D Translation factors 289 417 - -
Lele20g0981 482 Pfam Elongation factor Tu C-terminal domain 381 480 IPR004160 -
Lele20g0981 482 TIGRFAM EF-Tu: translation elongation factor Tu 75 482 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele20g0981 482 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 124 139 IPR031157 -
Lele20g0981 482 FunFam Elongation factor Tu 289 417 - -
Lele20g0981 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 309 IPR027417 -
Lele20g0981 482 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 PRINTS GTP-binding elongation factor signature 167 178 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 PRINTS GTP-binding elongation factor signature 204 213 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 PRINTS GTP-binding elongation factor signature 151 161 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 PRINTS GTP-binding elongation factor signature 131 139 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 Gene3D - 75 286 IPR027417 -
Lele20g0981 482 Pfam Elongation factor Tu GTP binding domain 83 284 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 CDD EF_Tu 84 286 IPR041709 -
Lele20g0981 482 Gene3D Translation factors 421 481 - -
Lele20g0981 482 SUPERFAMILY Translation proteins 288 384 IPR009000 -
Lele20g0981 482 Hamap Elongation factor Tu [tuf]. 74 482 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele20g0981 482 CDD EFTU_III 383 477 - -
Lele20g0981 482 Pfam Elongation factor Tu domain 2 308 376 IPR004161 GO:0005525
Lele20g0981 482 CDD EFTU_II 294 380 IPR033720 -
Lele20g0981 482 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 381 481 IPR009001 -
Lele20g0981 482 PANTHER ELONGATION FACTOR TU-RELATED 73 481 - -
Lele20g0981 482 TIGRFAM small_GTP: small GTP-binding protein domain 86 218 IPR005225 GO:0005525
Lele20g0981 482 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 287 IPR000795 GO:0003924|GO:0005525
Lele20g0981 482 FunFam Elongation factor Tu 74 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0981 Lele-ChrLele20 15846733 15848181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0981 81 480 Eukaryotic Initiation Factors Gene Family AT5G60390 28.864 3.88e-45 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele20g0981 20 15846733 15848181 Lele21g1746 21 25249584 25251657 CCT
Lele20g0981 20 15846733 15848181 Lele23g0263 23 1806059 1807878 CCT
Lele20g0981 20 15846733 15848181 Lele24g1687 24 22236593 22237970 CCT
Lele17g1087 17 21307545 21312448 Lele20g0981 20 15846733 15848181 hybridization
Lele18g0452 18 2644256 2645707 Lele20g0981 20 15846733 15848181 hybridization