Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0978 ATGAGCTCTTCCATGGAGGTTACCCTGCAAAATCCCCTAGTCGACGAAATGTCCGAACAAAATGGTGTCGCTGCCCAAGACCCAGGTCCTTCTCCCATGCTTTCTGAAGAGAAGTTCATCGTCTCCGGTACCATGAAATCATCCTCACCTCGCTCCGCGTTCGAAGTATGTTTGAAACCTTCAAGTACAGCTCGGATCGTGGATGTCCGTTTAGCCGTCGAGAGGATGCTTGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTCCTCTGCCTCTTGATGACAAGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGTGATACTGATGAGTCGACGAGCAATCATAACATTCTTTTGTTCTGGCAAGTGAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGCGAGGAAATAAGTACTGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGGATCTGGTCTCAAGCAAAGATTGTTAAGATATTCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAAAAACTATCCATTAGATTCAATCAAAGATACCCACAGTGTCAGCTGATTGAAGTTAATGCACACTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGAAAGCTGGTTGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCCGAAAAGCTGCTTTATCCGGTTCTGAACCTTCAGACTCTATTCGGGTCGTCAATGCATTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACAACGTCCAACATAACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATTCTACGGTCGTGCTTGGAGGAATTGATGCGCACAGGGATCTTGACAAGTTTACAGGATTGTATAAACATCAAGCTTCCAAATTATGCTAACGCTAGGGAGAAGTTGAACGCACCTGAGAAGGATGAAGCCGCTCAACTGTGTAAACAATTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGTAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTGCCCTTGAGCATCCTTCCGACTGCAACCCATTTAAGTTCTTATGTACAATGATAGAAGCAGCGAAGAGGGAGCGCTCTGAGCTTCCCGACTGA 1395 0.4344 MSSSMEVTLQNPLVDEMSEQNGVAAQDPGPSPMLSEEKFIVSGTMKSSSPRSAFEVCLKPSSTARIVDVRLAVERMLENRCLSYIDGPIPLPLDDKFLSENVQRICICDTDESTSNHNILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGMWESLIYGSGLKQRLLRYSASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLEELMRTGILTSLQDCINIKLPNYANAREKLNAPEKDEAAQLCKQLLETAEACEGMSGRSLRKLPFLAHAALEHPSDCNPFKFLCTMIEAAKRERSELPD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0978 464 ProSitePatterns AAA-protein family signature. 323 342 IPR003960 GO:0005524|GO:0016887
Lele20g0978 464 SMART AAA_5 201 353 IPR003593 -
Lele20g0978 464 CDD AAA 203 351 - -
Lele20g0978 464 Gene3D - 148 371 IPR027417 -
Lele20g0978 464 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 319 333 IPR001270 GO:0005524
Lele20g0978 464 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 205 223 IPR001270 GO:0005524
Lele20g0978 464 FunFam pachytene checkpoint protein 2 homolog 145 367 - -
Lele20g0978 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 433 IPR027417 -
Lele20g0978 464 Pfam ATPase family associated with various cellular activities (AAA) 205 350 IPR003959 GO:0005524|GO:0016887
Lele20g0978 464 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 44 461 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0978 Lele-ChrLele20 15830411 15835045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0978 205 378 Calmodulin-binding Proteins AT3G56690 29.545 3.91e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1084 17 21291879 21296665 Lele20g0978 20 15830411 15835045 hybridization
Lele18g0455 18 2657174 2661862 Lele20g0978 20 15830411 15835045 hybridization