Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0963 ATGTTCGCTGCTCAGACACTGCCAAAGCGCCAACGCCAAATATACATAACAGAAAGAGATAATATAATATCAGTAAGGCTTGAACCTTTCTCCTCTGTTCCGCGTGTCATTGGAGTTCGTAGCATTGTTGTAATGCCTGTGAACCCATGGACCCTCTTCTTCCTCTGCTTTTCTCTTTCACTTCTTCATCATTCTTTTATAGCTTTTGCAGTGAACTCGCAAGGAGAAGCTCTCCTTTCATGGAAGAGAACACTCAAGGGATCCCTGGAGGTGTTGAGCAATTGGAATCCAAATGACAGTACACCATGTGGCTGGTTTGGAGTTAACTGTAACTCCAACAACGAGGTTGTGAAATTAGATCTGAGGTATGTGGATTTGGTTGGAACACTTCCTTCTAATTTCACCTCACTGCTTTCTCTGAGCGAGCTAGTCTTAATGGGAACGAACCTAACTGGTTCAATTCCGAAAGAAATAGGCACTCTTGGCGAGCTCGACTACTTGGACTTGAGCGACAATGCATTGACAGGTGAAATCCCAAGTGAACTTTTCTTTTTGACAAAGATTGAGCAACTGCATCTGAACTCAAACCAGCTCGTGGGTTCGATTCCGAATGCAATCGGGAACCTCACAGAGTTGAAGTGGCTGGTTTTATATGACAATCAACTAAGTGGTGAAATTCCCAGAACCATTGGTAACTTGGGGAAGCTGCAAGTGATCAGAGCTGGAGGAAACCAGAACCTTCAAGGCTTCTTGCCGCACGAAATTGGCAACTGTACCAATTTGGTCATGCTGGGTTTGGCTGAAACTAGTCTCTCAGGTTCTCTTCCTCCAACTCTTGGCCTTCTTAAGAAGCTTGATACTTTTGCAATTTACACTTCACTTCTCTCTGGTCAAATTCCTTCCGAACTCGGTGATTGCGATGAGCTTCAGAATATTTATCTGTACGAGAATTCCCTCTCAGGATCCATACCAATTACACTGGGAAATCTTAGAAACCTCAAGAATCTTCTACTATGGCAAAACAATCTAATTGGTACCATCCCACCAGAGATTGGAAATTGCTACCAGTTATCCGTCATTGACATTTCGATGAACTCACTTGTCGGAAGCATTCCCAAAAGTTTTGGAAATTTGACGTTGCTCGAGGAACTTCAACTCAGTGTCAATCAGATTTCGGGTCAGATTCCAACAGAGTTGGGAAACTGTCAGCTGCTCACTCACATTGAGCTGGACAACAATCTAATCACGGGTACAATACCTTCTGAGTTTGGGAACCTTAGGAATCTAACTTTGTTGTTCTTGTGGCATAACCATCTCGAAGGAACTATACCATCTTCGCTTTCGAGTTGTCAAAATCTGGAAGCAGTTGATCTGTCACAGAATGGATTGATGGGTTCCATACCCAGGGGGATATTCCAGCTCAAGAATCTGAACAAGCTTTTACTACTCTCTAACAATCTCTCCGGGAATATACCCGCTGCGATTGGCAACTGTACGTCTCTGATTCGGTTCCGAGCCAGCAACAACAAAATCACAGGGAACATTCCATCAAATATTGGAAACCTGAAGAACTTGAATTTCTTGGACCTTGCAAGTAATCGCATTTCAGGAGTTATTCCTGAAGAATTCTCAGGAAGCTGGAATCTCGCATTTCTGGACCTCCATTCTAACTTGATATCAGGAAGCTTGCCGGAAAGTCTCAGCCAGCTACGCTCGCTCCAATTTATTGATGTCTCCGATAACATGATTGAAGGTAAACTAAGCCCAAGCCTCGGGAAGCTTGGCGAACTCACCAAATTCATTCTCAGAAAAAATCATATCACCGGGTCAATTCCAAGTGAATTTGGTTCTTGTGCGAAGCTGCAATTATTGGACCTCAGTAGCAATGAACTCTCAGGTAAAATCCCAGGTAGTCTGGGTAACATTCCGGCACTCGAAATCGCAATGAACCTCAGCTGGAATCAGCTCTGTGGCGAGATCCCCAGGGAGTTTTCTGCATTGAGCAAACTTGGAATTTTGGACATATCGCACAACGAGCTCATCGGTAGCCTTCAGTATCTCGAGGTCCTCCAAAATCTCGTAGTCCTCAACATCTCATACAACAATCTCTCGGGTCGCTTGCCCGACAAGCCTTTCTTCTCAAAGCTTCCTCTCGGCGTGCTCGAGGGGAACCCATCGCTCTGCTTCCCAGGCAATCGATGCCCCGGAGACACTTCCAGACGATCAATTCGACGGACAAAGGCGGCGCGTGTAGCCATGGTGGTCCTCCTGTGTACCGCGTGTTTGCTTTTCCTCACAGCCATTTACGTCGTCGTTGCAGCAAAAAGACGTGGGTTCTCGGAGCACGGTCTGGACCTCAACGGTGCGGATAGCGACGTGGAGATGGGCCCACCTTGGGAGGTGACCCTCTATCAGAAGCTAGACTTGTCAATATATGACGTGGCGAGATGCCTGACAGTTGGCAACATAATCGGCCGCGGACGATCTGGCGTTGTTTATAGAGTAGATCTCCCGTCGGGATTAACTATCGCCGTGAAAAGATACAGATTATCGGAGAAATTCTCAGCCTCTGCATTCTCATCAGAGATCGCCACGCTAGCAAGAATCCGCCACCGGAATATTGTACGGATATTGGGTTGGGCGGCGAACCGAAAAACGAAACTACTGTTGTATGACTATTTACCCAATGGTAATTTAGATGCGCTCTTGCATGATGGCTGCACAGGATTAGTCGAGTGGGAGACCCGGTTCAAGATAGCATTGGGCGTGGCCGAAGGGTTGGCTTATCTACACCATGGCTGCGTGCCGGCGATCTTGCACCGGGACGTCAAGGCGCATAACATTCTGTTGGGAGACACATACGAACCATGTTTGGCAGATTTTGGATTTGCAAGATTGGTGGACGACGATCACGGACCGTTTTCCGTCAATCCACAGTTCGCGGGTTCTTATGGCTACATTGCACCAGAATATGGATGCATGGTGAGAATAAGAGAGAAGAGCGACGTGTACAGCTTCGGAGTGGTACTGCTGGAGATAATAACGGGGAAAAGACCCCTGGACGCATCGTTCGCGGAGGAGGAGGGAGAGCACGTGATAGGGTGGGTAAGACAGAAGCTGAAGAGCAAGGCGGACCCATTGGAGATTGTTGATTCTAAGTTGCGAGGCCTTCCAGACACTCAAATCCAAGAGATGCTTCAGGGTCTTGGCATCGCTCTCTTGTGCACCAGCCTGCGTCCAGAGGATCGCCCCACCATGAAGGATGTTGCCGCATTATTGACAGAGATCAAACAAGATCCTTCCCCCCCTGATCACCCCCACAAGCCACCCCCGAAAACGACCCCTCATCCCTCGTCGTTTTCCTCCTCCTCCGCCTTGTCGCGCCTCCCGTCCTTTTCTCATTCTTCCGCCTGCTTCCCCGCCTATTCTTCTTCTTCTCTTGCCGTTTACCCCCCCACCTGA 3462 0.4772 MFAAQTLPKRQRQIYITERDNIISVRLEPFSSVPRVIGVRSIVVMPVNPWTLFFLCFSLSLLHHSFIAFAVNSQGEALLSWKRTLKGSLEVLSNWNPNDSTPCGWFGVNCNSNNEVVKLDLRYVDLVGTLPSNFTSLLSLSELVLMGTNLTGSIPKEIGTLGELDYLDLSDNALTGEIPSELFFLTKIEQLHLNSNQLVGSIPNAIGNLTELKWLVLYDNQLSGEIPRTIGNLGKLQVIRAGGNQNLQGFLPHEIGNCTNLVMLGLAETSLSGSLPPTLGLLKKLDTFAIYTSLLSGQIPSELGDCDELQNIYLYENSLSGSIPITLGNLRNLKNLLLWQNNLIGTIPPEIGNCYQLSVIDISMNSLVGSIPKSFGNLTLLEELQLSVNQISGQIPTELGNCQLLTHIELDNNLITGTIPSEFGNLRNLTLLFLWHNHLEGTIPSSLSSCQNLEAVDLSQNGLMGSIPRGIFQLKNLNKLLLLSNNLSGNIPAAIGNCTSLIRFRASNNKITGNIPSNIGNLKNLNFLDLASNRISGVIPEEFSGSWNLAFLDLHSNLISGSLPESLSQLRSLQFIDVSDNMIEGKLSPSLGKLGELTKFILRKNHITGSIPSEFGSCAKLQLLDLSSNELSGKIPGSLGNIPALEIAMNLSWNQLCGEIPREFSALSKLGILDISHNELIGSLQYLEVLQNLVVLNISYNNLSGRLPDKPFFSKLPLGVLEGNPSLCFPGNRCPGDTSRRSIRRTKAARVAMVVLLCTACLLFLTAIYVVVAAKRRGFSEHGLDLNGADSDVEMGPPWEVTLYQKLDLSIYDVARCLTVGNIIGRGRSGVVYRVDLPSGLTIAVKRYRLSEKFSASAFSSEIATLARIRHRNIVRILGWAANRKTKLLLYDYLPNGNLDALLHDGCTGLVEWETRFKIALGVAEGLAYLHHGCVPAILHRDVKAHNILLGDTYEPCLADFGFARLVDDDHGPFSVNPQFAGSYGYIAPEYGCMVRIREKSDVYSFGVVLLEIITGKRPLDASFAEEEGEHVIGWVRQKLKSKADPLEIVDSKLRGLPDTQIQEMLQGLGIALLCTSLRPEDRPTMKDVAALLTEIKQDPSPPDHPHKPPPKTTPHPSSFSSSSALSRLPSFSHSSACFPAYSSSSLAVYPPT 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0963 1153 ProSitePatterns Protein kinases ATP-binding region signature. 824 846 IPR017441 GO:0005524
Lele20g0963 1153 SUPERFAMILY RNI-like 118 440 - -
Lele20g0963 1153 Gene3D Transferase(Phosphotransferase) domain 1 894 1104 - -
Lele20g0963 1153 Gene3D Ribonuclease Inhibitor 648 735 IPR032675 -
Lele20g0963 1153 Gene3D Ribonuclease Inhibitor 406 647 IPR032675 -
Lele20g0963 1153 MobiDBLite consensus disorder prediction 1097 1130 - -
Lele20g0963 1153 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 71 244 - -
Lele20g0963 1153 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 245 468 - -
Lele20g0963 1153 Pfam Protein kinase domain 820 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0963 1153 Pfam Leucine rich repeat 405 463 IPR001611 GO:0005515
Lele20g0963 1153 Pfam Leucine rich repeat 596 656 IPR001611 GO:0005515
Lele20g0963 1153 Pfam Leucine rich repeat 524 583 IPR001611 GO:0005515
Lele20g0963 1153 Pfam Leucine rich repeat 331 391 IPR001611 GO:0005515
Lele20g0963 1153 SUPERFAMILY L domain-like 419 730 - -
Lele20g0963 1153 ProSiteProfiles Protein kinase domain profile. 818 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0963 1153 FunFam LRR receptor-like serine/threonine-protein kinase 568 643 - -
Lele20g0963 1153 Pfam Leucine rich repeat N-terminal domain 72 111 IPR013210 -
Lele20g0963 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 469 563 - -
Lele20g0963 1153 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 506 1093 - -
Lele20g0963 1153 Gene3D Ribonuclease Inhibitor 326 405 IPR032675 -
Lele20g0963 1153 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 894 1108 - -
Lele20g0963 1153 SUPERFAMILY Protein kinase-like (PK-like) 810 1132 IPR011009 -
Lele20g0963 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 938 950 IPR008271 GO:0004672|GO:0006468
Lele20g0963 1153 FunFam Putative LRR receptor-like serine/threonine-protein kinase 648 733 - -
Lele20g0963 1153 Gene3D Phosphorylase Kinase; domain 1 810 893 - -
Lele20g0963 1153 Gene3D Ribonuclease Inhibitor 71 226 IPR032675 -
Lele20g0963 1153 Gene3D Ribonuclease Inhibitor 227 325 IPR032675 -
Lele20g0963 1153 SMART serkin_6 818 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0963 1153 SMART LRR_typ_2 594 618 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 522 545 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 330 354 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 209 233 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 426 450 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 690 723 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 451 474 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 378 402 IPR003591 -
Lele20g0963 1153 SMART LRR_typ_2 161 185 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0963 Lele-ChrLele20 15720374 15725585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0963 69 1119 Receptor kinase-like Gene Family AT5G56040 53.439 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele20g0963 Pkinase 5e-39 CL0016