Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0946 ATGGATCTTCACACAAATCTCAGAGATAACTCTTACATCACCTCATCACAGCCAATAATGCATCTTCAAGAAACTTACCAGCTGAGGCATAATATGATGAAATTAGATGAATCTCCTTTTAGGGTTCCTCATTCATCATCATCAGAGGGTTTCTTGCAAGATTTTAATTACCACGTTGATCATCATAATCATCAACTTAATGGGTCTTCATCATTATCCAACCCATCATCATCAGCTTTTGGGATCCCTACTTTGATGAGTTTTGATTCTTTTGATGATTTTGATGTTTATGAGTGCAAGCCTTTTGTTGATGAGATCAATAATAATGCTCATCATCAGGTTTTGGATAATTTCCAATATGGATCAGCTAATTGTAGCTTGAACGTCGTCCCTCAGAGGAATCAAGTCAACAACATGAACCAAACCTATGTGATGCCTTTCAATAATTCTGAGGAAATTATAAAGCCTGTGAATTTTGTTGTGCCAGATGAACTCTCGTGCATATCACCTTCGGTGAATTACTGCAGAAAAGTTTGCTTCAATAAGAAAAGTAATAGGGTTTCATCATCATCTCTAACCACTAGAAGGACGAGTTACAGACTTCGCAAGAAATCCAACGCTGTAAAGGGCCAATGGACCATAGAAGAAGATAGGTTGCTGATTCAATTGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGCAAACAGTGCAGAGAGAGATGGCATAATCATCTAAGACCTGACATTAAGAAGGAGACATGGACGGAAGAAGAAGACAAGATACTGATAGAAGCTCATGGAGAGATAGGGAACAAATGGGCAGAGATAGCAAAGAGATTGCCTGGAAGAACAGAAAATTCCATAAAGAACCATTGGAATGCGACAAAGAGAAGACAATATTCAAAGAGAAAATGTCGCTCAAAGCACCCAAGACCCTCTCTTCTACAAGAATACATCAAAAGCTTGAACTTAGACCAAAACCCTCCATTAGACTATCGTAAAAGATCATCATCACCACCATCTGCTGCTGCTGCTAATAACACTTCCGCCAAAATCGTAATTGAACCGGAAGCATTATCTCAGTCTCAGTTAATAAATCGATTGGTGCAGAATAATTATGGGTTTAAGGAGGCCGAAGAGTTTTGCTTTAACGAGAGCTTGCTTCGAGAAGTAGGTGACTGCGACAATCTTGATTCCATGCTAAATGATGATGGCGATGATGACAAGTTTGAAGAGAAGAAGGAGCTGGATTTGGTAGAGATGATGTCTCAGGTCAATCAAGCTATTATTGATATGTAA 1329 0.3905 MDLHTNLRDNSYITSSQPIMHLQETYQLRHNMMKLDESPFRVPHSSSSEGFLQDFNYHVDHHNHQLNGSSSLSNPSSSAFGIPTLMSFDSFDDFDVYECKPFVDEINNNAHHQVLDNFQYGSANCSLNVVPQRNQVNNMNQTYVMPFNNSEEIIKPVNFVVPDELSCISPSVNYCRKVCFNKKSNRVSSSSLTTRRTSYRLRKKSNAVKGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKILIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKHPRPSLLQEYIKSLNLDQNPPLDYRKRSSSPPSAAAANNTSAKIVIEPEALSQSQLINRLVQNNYGFKEAEEFCFNESLLREVGDCDNLDSMLNDDGDDDKFEEKKELDLVEMMSQVNQAIIDM 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0946 442 MobiDBLite consensus disorder prediction 335 357 - -
Lele20g0946 442 Pfam Myb-like DNA-binding domain 261 303 IPR001005 -
Lele20g0946 442 Pfam Myb-like DNA-binding domain 209 255 IPR001005 -
Lele20g0946 442 SUPERFAMILY Homeodomain-like 207 302 IPR009057 -
Lele20g0946 442 ProSiteProfiles Myb-like domain profile. 256 306 IPR001005 -
Lele20g0946 442 PANTHER MYB PROTEIN-RELATED 199 346 - -
Lele20g0946 442 Gene3D - 262 327 - -
Lele20g0946 442 MobiDBLite consensus disorder prediction 340 357 - -
Lele20g0946 442 Gene3D - 208 260 - -
Lele20g0946 442 SMART sant 208 257 IPR001005 -
Lele20g0946 442 SMART sant 260 308 IPR001005 -
Lele20g0946 442 CDD SANT 263 306 IPR001005 -
Lele20g0946 442 MobiDBLite consensus disorder prediction 297 321 - -
Lele20g0946 442 CDD SANT 212 255 IPR001005 -
Lele20g0946 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 310 IPR017930 -
Lele20g0946 442 FunFam Transcription factor MYB119 262 326 - -
Lele20g0946 442 FunFam Transcriptional activator Myb isoform A 208 261 - -
Lele20g0946 442 MobiDBLite consensus disorder prediction 305 319 - -
Lele20g0946 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 259 IPR017930 -
Lele20g0946 442 ProSiteProfiles Myb-like domain profile. 204 255 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0946 Lele-ChrLele20 15615441 15617152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0946 33 413 MYB Transcription Factor Family AT4G18770 46.914 1.81e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele20g0946 Myb_DNA-binding 1.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1048 17 21082237 21083872 Lele20g0946 20 15615441 15617152 hybridization
Lele18g0489 18 2886419 2892563 Lele20g0946 20 15615441 15617152 hybridization