Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0926 ATGGCTATCAGAGGCGTCGATTTTAAGTGGTACGATGGGTTTTTCTTGTCGATGCTTGCTACCAGCGTAGTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCGTTGCACATATGGATTGTGGTTGACTACTCTACCGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACCCTCTGGTTCGCCAGTTCCAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGCACTGCTCTGCGTTGCTTGCATGTCATTAGGCAAGTGGTTGACCCGAAGACAAGCACATTTGTTACGTGCTCAGCAGGGTATTCCTGTCTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCACTTGAAGCTGCTGGTCAGGAAACAAGAGTTATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTACCTAACCCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGCTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTCCACGAGGGGAATGAGGTTCGTGGCCTGCCTTGCGCTCATAATTTTCATGTTGAGTGTATTGATGAATGGCTTCGCCTTAATGTAAAATGTCCTCGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGTGTTGTGACAACAAGAAGATATGTGAGAGATCAACCTTCAAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTCCGTCCAGTGCGTTCAGAAATTGCGGGGCCGGGGGGTGAGGTGGGTAATACTTTGGAAAATGCAGAGAATGGTAGTGTGCCGGAAGTGACGCGAAATGCATCAATTGGACACCAAGGCCCTTCAGTTGAATGCATGCCTGTCAGTCTCTCCTCTGCACAGAGCTAG 1143 0.4724 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFASSRNCLPEEGQKWGFLIWLLFSYCALLCVACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWALEAAGQETRVMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTRRYVRDQPSSQSYLLRLQGLLRPVRSEIAGPGGEVGNTLENAENGSVPEVTRNASIGHQGPSVECMPVSLSSAQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0926 380 CDD RING-H2_RNF111_like 234 278 - -
Lele20g0926 380 Pfam Ring finger domain 234 276 IPR001841 -
Lele20g0926 380 SUPERFAMILY RING/U-box 217 284 - -
Lele20g0926 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Lele20g0926 380 SMART ring_2 235 275 IPR001841 -
Lele20g0926 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Lele20g0926 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Lele20g0926 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0926 Lele-ChrLele20 15513938 15517925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0926 58 360 C3H Transcription Factor Family AT3G47990 72.222 3.67e-157 442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1798 21 25637754 25639802 Lele20g0926 20 15513938 15517925 CCT
Lele22g1774 22 22956517 22958565 Lele20g0926 20 15513938 15517925 CCT
Lele23g0210 23 1390084 1392132 Lele20g0926 20 15513938 15517925 CCT
Lele24g1735 24 22603580 22605628 Lele20g0926 20 15513938 15517925 CCT
Lele17g1028 17 20939484 20943540 Lele20g0926 20 15513938 15517925 hybridization
Lele18g0507 18 3011652 3017092 Lele20g0926 20 15513938 15517925 hybridization