Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0921 ATGAAGCGAACCTTGAACTACTTGGGAATCAAAAGTTGGAATGATTGTAACAAAGAGATTAAATTCTTAGAAGATGAAGTCAACTTCAACTGCTCCGAAGATCACGGAGTTTCCGCAGCCAAGTCCGGTCACCGGAGTCGTGACATAACGAGAACCATTGTCCCCGGTAGTACAGCTTCAGCACACGCCATGCAATTTCTTTCTTGGTTCACTGCCAGGAGCCTTGTGTTCGGAACAGATGAGCAGAAAAACAAAGCAGCTTACGAAATTCGTGTGCTTGCAAGGTCCAACATTTTCAACAGAGCATGTTTGATTGAAGTTGGAACAGTTCCTTCATTACTCAATCTTTTAGACACGAACGATAAATCAACGCAAGAGAACGCAATCTCTGCTCTTCTGAAGCTGGCAAAGCATACTAATGGACAGAACACTATAATGGAAAGCGAGGGATTAACACCAATTATTATGGTTCTCAACAATGGAATAACTCTGGAAGCTCGTCAAACCGCAGCTGCTATAATATTCTACCTTTCTTCCATGAGAGAGAACAGGAAAATAATCGGAGAACCAGAAGCAATCCCAGCTTTGGTTGAACTAATCAAGGAAGAAACAACAGCCTTGGGGAAAAAGAATGCCATAGTCGTCATTTTCGGTCTTCTCTTGCTTCCTCAGAATCATCAGAAAGTGCTTGAAGCCAATACCGTTCCTGCGCTAGTTACCATCTTAGCTTCGTCGGAAAAATACGATCTGACCACAGATTGTTTAGCGGTTCTTGCGGCGTTGGCGGAGAACGAGGAAGGGGCAAAAGCTGTGTCAAAAGCTTGTGCTTTGCCTGTGATCGTAGGGATGTTGCCGACGGTAACATGGAGAACAGGGAAAGAACACTGTGTGGCAATTTTGATGTCGCTGTGTTTGCATGTTGGAGAAGAGGGGGTGAGTGTTCTGGCTAAGGATCCTTCGTTGATGCCATGGCTTTACTCGCTGATCACCGACGGTACTTCTCATGCGGCCAAGAAAGCGCGTTCTCTGATCAAGGTTCTTCATGAATTCAACGACACTAGAACTTCTCAGTGGATTAAATGGGATGAGGAGGAGGAAGGAAAGGAAATGATCCAGCTGTGGGAAGATGATTGGGATGACGATGATGTTAGTGATGATTTTTCTATTCAGCTGAGGAAGGAGCTGGAAAGCAATGCTGAAAATGAAAAGAAGGGAAACCATCTGCTACTTGCAGCTGCTTGA 1242 0.4469 MKRTLNYLGIKSWNDCNKEIKFLEDEVNFNCSEDHGVSAAKSGHRSRDITRTIVPGSTASAHAMQFLSWFTARSLVFGTDEQKNKAAYEIRVLARSNIFNRACLIEVGTVPSLLNLLDTNDKSTQENAISALLKLAKHTNGQNTIMESEGLTPIIMVLNNGITLEARQTAAAIIFYLSSMRENRKIIGEPEAIPALVELIKEETTALGKKNAIVVIFGLLLLPQNHQKVLEANTVPALVTILASSEKYDLTTDCLAVLAALAENEEGAKAVSKACALPVIVGMLPTVTWRTGKEHCVAILMSLCLHVGEEGVSVLAKDPSLMPWLYSLITDGTSHAAKKARSLIKVLHEFNDTRTSQWIKWDEEEEGKEMIQLWEDDWDDDDVSDDFSIQLRKELESNAENEKKGNHLLLAAA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0921 413 SUPERFAMILY ARM repeat 81 350 IPR016024 -
Lele20g0921 413 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 108 150 IPR000225 GO:0005515
Lele20g0921 413 Pfam Armadillo/beta-catenin-like repeat 100 136 IPR000225 GO:0005515
Lele20g0921 413 Pfam DSS1/SEM1 family 349 396 IPR007834 GO:0006406|GO:0008541|GO:0043248
Lele20g0921 413 Gene3D - 71 220 IPR011989 -
Lele20g0921 413 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 233 276 IPR000225 GO:0005515
Lele20g0921 413 PANTHER U BOX DOMAIN-CONTAINING 33 347 - -
Lele20g0921 413 SMART DSS1_SEM1_2 339 397 IPR007834 GO:0006406|GO:0008541|GO:0043248
Lele20g0921 413 SMART arm_5 96 137 IPR000225 GO:0005515
Lele20g0921 413 SMART arm_5 222 263 IPR000225 GO:0005515
Lele20g0921 413 FunFam RING-type E3 ubiquitin transferase 45 358 - -
Lele20g0921 413 Gene3D - 221 351 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0921 Lele-ChrLele20 15490149 15494168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0921 45 355 U-box Gene Family AT1G10560 37.342 2.25e-60 206