Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0909 ATGGCAACATTTGCAGGCACTACCCAGAAGTGTAAGGCCTGTGAGAAGACAGTCTATTTGGTTGATCAGCTTACTACTGACAACAAAATTTACCACAGATTCTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGAGTTTTATACTGCAAGCCTCATTATGATCAACTCTTGAAGAAGACTGGAAGCTTACAAAAAAGTTTTGAAGGTATTCCAATAACTGCTAGAGTTGTCAGGTCTGCTGATCAGGTGCAAACCAATGGCAAGGTTTCTAGATTTTTTGTTGGAACTCAGGACAAGTGTGTTGCTTGCAACAAGACGGTATACCCAATCGAAAAGGTGGCCGTTGACGGAAAAACTTACCACAAGATTTGTTTCAGATGCTCCCATGGAGGATGTTTGATCAGCCCTTCTAACTATGTGGCCCATGAACACCGTCTCTACTGCAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAACTTGACCGCCATGAAAACCAAACTCAACGTGAAAATGAAAATGAAAAAGAAAAAGAAAATGAGAATGAGAATGAAAATGAAAATGTCGAGGAGGCCACCGAGAACACAATAAACGAGTAG 642 0.4206 MATFAGTTQKCKACEKTVYLVDQLTTDNKIYHRFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLLKKTGSLQKSFEGIPITARVVRSADQVQTNGKVSRFFVGTQDKCVACNKTVYPIEKVAVDGKTYHKICFRCSHGGCLISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDRHENQTQRENENEKEKENENENENENVEEATENTINE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0909 213 FunFam LIM domain and actin-binding 1 5 75 - -
Lele20g0909 213 Pfam LIM domain 11 64 IPR001781 -
Lele20g0909 213 Pfam LIM domain 110 165 IPR001781 -
Lele20g0909 213 PANTHER OS06G0237300 PROTEIN 4 90 IPR045268 -
Lele20g0909 213 CDD LIM2_SF3 110 170 - -
Lele20g0909 213 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lele20g0909 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Lele20g0909 213 Gene3D Cysteine Rich Protein 5 75 - -
Lele20g0909 213 Gene3D Cysteine Rich Protein 104 174 - -
Lele20g0909 213 Coils Coil 175 213 - -
Lele20g0909 213 MobiDBLite consensus disorder prediction 169 213 - -
Lele20g0909 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Lele20g0909 213 FunFam LIM domain and actin-binding 1 104 174 - -
Lele20g0909 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lele20g0909 213 MobiDBLite consensus disorder prediction 172 197 - -
Lele20g0909 213 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lele20g0909 213 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lele20g0909 213 SMART lim_4 109 161 IPR001781 -
Lele20g0909 213 SMART lim_4 10 62 IPR001781 -
Lele20g0909 213 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0909 Lele-ChrLele20 15435005 15437124 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele20g0909 LIM 1.1e-10 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1014 17 20858381 20869105 Lele20g0909 20 15435005 15437124 hybridization