Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0905 ATGGGCGGCAATGGCAGGCCCAGGTGGAAAATCTCTTTCTATCGCCATTCCCCAAGCTCCAAGCTCCAATCAAAAGAGCCTCCCGTCGAGTTTCTATGCCCAATTTCAGGGTCTCTTATGGCTGAACCCGTCATTGTCGCTTCCGGTCAGACCTTTGAATCGGTTTCTGTTCAAGTGTGCACAGACTTAGGTTTCTCTCCCAAGCTTGAAGACGGGTCCACACCTGACTTCTCCGCTGTCATTCCGAATTTGGCTCTCAAATCCACCATATACAATTGGTGTGTTAAATCCGGGGCGGTGAACCCTCGCCCGCCAGAGTATAGCTCCGTGGAGATGATCGTCCGTACAGCTATGGCGTCCGCGCTCGAAAATCAGGAGTCAGGTTTAAGGGCTTCGGATAGGGAATTGCTCGAGTCCATGCCGGATAATCCACCGGTCATTTTCTCTCACGCCGCCACGGAGTTGGGTCCTCGGGTCAACCCATTCAAAACGAGTTCATCCGAGCCGGCTATCGCCGCTGGGTGTCCACAGACTCCTTTGCCTCTCGCCACTCGCCCCACCTGTTACTCGTCTTCGTCTTTTTCTGTCGAAATTAACGAGAATGAACACCAAAACCAGAACCCTATTGGTCCAATTTCCCAGGAAGAGGAGAAATTAGTGCTGGAGCTGAGGGGCGACGAAGCTTCTGAGCAGGAAGAAGCAGTTATTTCGCTCAGACACGTCACCAAGACAAGAGAGGACACCAGGATTTCTCTTTGCACGCTTGCGTTACTCTCATGA 780 0.5218 MGGNGRPRWKISFYRHSPSSKLQSKEPPVEFLCPISGSLMAEPVIVASGQTFESVSVQVCTDLGFSPKLEDGSTPDFSAVIPNLALKSTIYNWCVKSGAVNPRPPEYSSVEMIVRTAMASALENQESGLRASDRELLESMPDNPPVIFSHAATELGPRVNPFKTSSSEPAIAAGCPQTPLPLATRPTCYSSSSFSVEINENEHQNQNPIGPISQEEEKLVLELRGDEASEQEEAVISLRHVTKTREDTRISLCTLALLS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0905 259 CDD RING-Ubox 32 68 - -
Lele20g0905 259 FunFam RING-type E3 ubiquitin transferase 9 100 - -
Lele20g0905 259 Pfam U-box domain 28 95 IPR003613 GO:0004842|GO:0016567
Lele20g0905 259 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Lele20g0905 259 PANTHER U BOX DOMAIN-CONTAINING 27 253 - -
Lele20g0905 259 SUPERFAMILY RING/U-box 14 101 - -
Lele20g0905 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 100 IPR013083 -
Lele20g0905 259 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0905 Lele-ChrLele20 15421077 15421856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0905 1 259 U-box Gene Family AT5G65200 44.689 6.49e-60 196