Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0901 ATGAATAGTGTTGGTCCAGTCCAGAAGATGACCTGGGAAATAAACTTGCTAGTCTCACTGGCTCCTTCTTGTGTTGGTTTCATCAGCTCGATCTCTAGAAATGGCGATCTCAGTGATATTCCGGCTGCCACTTCGGAAGATGTGGAGCTTGCAGTGGCTGCTGCTAGAAGAGCCCTCACCCGGAACAAAGGCTCGGATTGGTCAACGGCTTCTGGGTCTGTTCGGGCTCGCTATCTTCGAGCTATTGCTGATAAGGTTAAAGAGAGAAAGGATGAACTAGCAAAACTCGAAGCACTAGACTGTGGAAAACCACTAGAAGAAGCAGCGTGGGACATTGATGATGTTGCTGGTTGCTTTGAGTACTATGCTGACCTTGCTGAAGGTTTGGATGCAAAGCAAAAGGCTCCTGTATCTCTTCCCATGGACACCTTCAAGTCTTATGTTCTTCAGGAGCCCATTGGGGTTGTAGGATTAATTACTCCCTGGAATTATCCTATGTTAATGGCTACATGGAAGGTTGCTCCAGCTCTGGCTGCTGGTTGTACTGCAATATTAAAGCCTTCGGAATTGGCTTCTATAACCTGTTTGGAGCTGGCTGATATCTGTAGAGAAGTGGGCCTTCCTCCAGGTGTCTTAAATATTCTCACTGGATTAGGCCCTGAAGCTGGTGCTCCTTTGGCATCCCATCGTCATGTAGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAGATTATGACAGCTGCAGCTCAACTGGTGAAGCCTGTTTCGCTAGAGCTTGGTGGGAAAAGCCCTATCATTGTTTTTGAGGATGTTGACCTAGATAAGGCTGCTGAATGGACCGTCTTTGGCTGCTTCTGGACAAATGGTCAAATATGCAGTGCAACATCCCGTCTTATTGTACATGAAAGCATAGCGACAGAATTTCTGAATAGGTTGGTGAAGTGGATAAAAAATATCAAAGTTTCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGCCCTGTTGTCAGTGAGGGACAGTGTGAAAAGATATTGAAATTCATTGAAACTGCTAAGAGAGAGGGTGCAACAATTTTGACTGGTGGGTCCCGTCCTGAGCATTTAAAGAAGGGATTTTTCGTGGAACCAACTGTTATAACTGATGTGACTACTGCCATGCAAATTTGGAGAGAGGAAGTTTTTGGACCTGTTCTTGCTGTAAAAACGTTTAGTAATGAGGAAGAAGCAATTGAATTAGCAAATGACACCCATTATGGACTGGGTGCAGCTGTAATATCTAATGATCTAGAAAGATGTGAGCGTGTAACCAAGGCTTTCCAGGCTGGGATTGTTTGGATCAATTGTTCTCAGCCATGCTTCACTCAAGCCCCATGGGGAGGCAAAAAACGTAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGGCTTAATAACTACTTGAACGTGAAGCAAGTCACCCAGTACATCTCTGATGAACCATGGGGAATCGAATCGATGAGTTCCAAAGAGAGTTGCCGAAGTGAACTTCGCATTGCGATTCGTCAACTCAATGATCGTTGTCTCTACTCTGGTTCCAAATGGGCAGCAGAACAATTGACTGGCATTGAGCAAGACCCAGCAAAGTTCACGCCTTCAAACACCAGATTTCAGCGTGGGAGTTCAAGCATTCAGAGGAGATATCGGACTAATGAGATCACTGCAACTCCTGTTGCGGGTGTTTCATATGTAACCACTCCTGTGATGGTGGAAGATGATTTTGTTGATGGTGACTTTTATCTTTTGGCTAAGTCTTATTTTGACTGCCGAGAGTATAAAAGAGCTGCGCATGTTCTACGTGATCAAACTGGAAGGAAATCTCTATTCTTGCGCTGTTACGCTCTATATCTGGCTGGAGAAAAACGAAAAGAGGAGGAGATGATAGAACTTGAAGGACCTTTAGGTAAGAGTGATGCCATAAATCGAGAATTGGTTTCTCTGGAGAGAGAGTTGTCAACACTTCGCAAGAATGGTACAATTGACCCATTTGGATTGTACTTATATGGTCTGGTACTCAAACAGAAAGGCAGTGAGAGTCTTGCTCGCACCGTTCTTGAGGAATCTGTGAATAACTACCCTTGGAACTGGAATGCCTGGTCTGAGCTGCAATCTTTATGCACTACAATTGATATCCTAAATAGTCTTAATCTCAATAATCACTGGATGAAGGACTTTTTTCTTGCTAGTGCTTACCAAGAATTAAGGATGCACAATGAATCTTTGGCGAAATATCAATATTTACAAGGAACCTTTGGTTATAGTAATTATATACAGGCTCAAATTGCAAAGGCCCAGTACAGTTTGAGGGAATTTGATCATGTTGAAGCAATATTTGAAGAGCTTCTACGAAATGATCCTTACAGAGTGGACGACATGGATATGTACTCCAATGTGCTTTATGCTAAGGAATCCGCTTCTGCTCTGAGTCACCTTGCCCATAGAGTATTTATGACTGATAAATATAGACCTGAATCTTGTTGTATCATTGGGAATTATTACAGTCTAAAGGGGATGCATGAAAAGTCAGTTATGTATTTTAGGAGGGCCCTCAAATTAAACAAAAATTATTTATCTGCCTGGACACTAATGGGTCATGAATTTGTTGAGATGAAGAACACTCCAGCAGCTGTGGATGCGTATCGTCGTGCTGTAGATATAGACCCATGTGATTATCGTGCGTGGTATGGACTTGGCCAAGCTTACGAGATGATGGGTATGCCTTTGTATGCTCTTCACTACTTCCGTAAGTCTGTGTTCTTGCAACCAAATGATTCTCGATTGTGGATTGCAATGGGACAATGCTACGAAACCGAACAACTTCGAATGCTTGATGAGGCCATAAAGTGTTACAGAAGGGCTGCAGATTGTAATGACGGGGAAGCAATTGCTCTGCACCAACTAGCAAAGCTGCACTCTGATCTGGGGCGTCCTGATGAGGCAGCATTTTACTACAAGAAGGATTTGGAAAGGATGGAAGATGAGGAGAGGGAAGGACCCAACATGGTCGAGGCTTTGATTTATCTTGCAACATACTGCAGAGCCCAAAAAAGATATGAAGAAGCAGAGATTTATTGTACACGTCTTCTGGATTATACGGGACCGGAGAGAGAAACGGCGAAAAGTTTGCTTAGAGGGATGGGAATGGGATCGTCACAATCCGGTCACCCTGCAATGGATATTGAGCACTTTCCACCCTAA 3237 0.4384 MNSVGPVQKMTWEINLLVSLAPSCVGFISSISRNGDLSDIPAATSEDVELAVAAARRALTRNKGSDWSTASGSVRARYLRAIADKVKERKDELAKLEALDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMDTFKSYVLQEPIGVVGLITPWNYPMLMATWKVAPALAAGCTAILKPSELASITCLELADICREVGLPPGVLNILTGLGPEAGAPLASHRHVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWTVFGCFWTNGQICSATSRLIVHESIATEFLNRLVKWIKNIKVSDPLEEGCRLGPVVSEGQCEKILKFIETAKREGATILTGGSRPEHLKKGFFVEPTVITDVTTAMQIWREEVFGPVLAVKTFSNEEEAIELANDTHYGLGAAVISNDLERCERVTKAFQAGIVWINCSQPCFTQAPWGGKKRSGFGRELGEWGLNNYLNVKQVTQYISDEPWGIESMSSKESCRSELRIAIRQLNDRCLYSGSKWAAEQLTGIEQDPAKFTPSNTRFQRGSSSIQRRYRTNEITATPVAGVSYVTTPVMVEDDFVDGDFYLLAKSYFDCREYKRAAHVLRDQTGRKSLFLRCYALYLAGEKRKEEEMIELEGPLGKSDAINRELVSLERELSTLRKNGTIDPFGLYLYGLVLKQKGSESLARTVLEESVNNYPWNWNAWSELQSLCTTIDILNSLNLNNHWMKDFFLASAYQELRMHNESLAKYQYLQGTFGYSNYIQAQIAKAQYSLREFDHVEAIFEELLRNDPYRVDDMDMYSNVLYAKESASALSHLAHRVFMTDKYRPESCCIIGNYYSLKGMHEKSVMYFRRALKLNKNYLSAWTLMGHEFVEMKNTPAAVDAYRRAVDIDPCDYRAWYGLGQAYEMMGMPLYALHYFRKSVFLQPNDSRLWIAMGQCYETEQLRMLDEAIKCYRRAADCNDGEAIALHQLAKLHSDLGRPDEAAFYYKKDLERMEDEEREGPNMVEALIYLATYCRAQKRYEEAEIYCTRLLDYTGPERETAKSLLRGMGMGSSQSGHPAMDIEHFPP 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0901 1078 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 459 IPR016163 GO:0016620
Lele20g0901 1078 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 288 299 IPR016160 GO:0016491
Lele20g0901 1078 Pfam Tetratricopeptide repeat 976 1007 IPR019734 GO:0005515
Lele20g0901 1078 Pfam TPR repeat 877 918 - -
Lele20g0901 1078 Gene3D Tetratricopeptide repeat domain 833 1043 IPR011990 GO:0005515
Lele20g0901 1078 Coils Coil 79 99 - -
Lele20g0901 1078 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 37 484 IPR016162 GO:0016491
Lele20g0901 1078 Gene3D Tetratricopeptide repeat domain 500 832 IPR011990 GO:0005515
Lele20g0901 1078 ProSiteProfiles TPR repeat profile. 870 903 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 768 801 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 1015 1048 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 974 1007 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 870 903 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 836 869 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 904 937 IPR019734 GO:0005515
Lele20g0901 1078 SMART tpr_5 938 973 IPR019734 GO:0005515
Lele20g0901 1078 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 260 267 IPR029510 GO:0016491
Lele20g0901 1078 CDD ALDH_F10_BADH 37 488 - -
Lele20g0901 1078 FunFam Betaine aldehyde dehydrogenase 264 455 - -
Lele20g0901 1078 Pfam Aldehyde dehydrogenase family 37 486 IPR015590 GO:0016491
Lele20g0901 1078 Pfam Anaphase promoting complex subunit 8 / Cdc23 506 656 IPR007192 GO:0005680|GO:0030071
Lele20g0901 1078 ProSiteProfiles TPR repeat profile. 836 869 IPR019734 GO:0005515
Lele20g0901 1078 MobiDBLite consensus disorder prediction 1059 1078 - -
Lele20g0901 1078 PANTHER ALDEHYDE DEHYDROGENASE 37 524 - -
Lele20g0901 1078 Pfam Tetratricopeptide repeat 837 868 IPR019734 GO:0005515
Lele20g0901 1078 ProSiteProfiles TPR repeat profile. 904 937 IPR019734 GO:0005515
Lele20g0901 1078 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 31 278 - -
Lele20g0901 1078 SUPERFAMILY TPR-like 836 1002 IPR011990 GO:0005515
Lele20g0901 1078 Coils Coil 650 670 - -
Lele20g0901 1078 SUPERFAMILY ALDH-like 38 490 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0901 Lele-ChrLele20 15393839 15403056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0901 43 496 Aldehyde Dehydrogenase Gene Family AT1G74920 83.480 0.0 813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1826 21 25837962 25839513 Lele20g0901 20 15393839 15403056 CCT
Lele22g1801 22 23149870 23151398 Lele20g0901 20 15393839 15403056 CCT
Lele23g0183 23 1171059 1172473 Lele20g0901 20 15393839 15403056 CCT
Lele24g1763 24 22808255 22809785 Lele20g0901 20 15393839 15403056 CCT
Lele17g1009 17 20828400 20835102 Lele20g0901 20 15393839 15403056 hybridization
Lele18g0528 18 3116616 3120832 Lele20g0901 20 15393839 15403056 hybridization