Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0892 ATGTCTCACACGTGCGCTGCCGCCTATTCCGCCGTAAGCGCTGATGGGGATGGTTCCACCGGAGAGATCATGCTGTTTGGGGTTAGAGTTGTGGTCGATTCCATGAGGAAGAGCGTGAGCATGAATAATCTCTCTCAGTACGAGCATCCCCAGGACGCCGCAAACAATAATAACGGCAACAAGGAAGATGCTCTGGCTGCCGGCTATGCCTCCGCCAATGAAGCTACTGCTCATAATTCTGGCAGGCATCGCGAGCGTGAGCGTAAGCGAGGAGTTCCGTGGACAGAGGAAGAGCACAAGCTGTTCTTGCTGGGATTGCAGAAAGTTGGTAAAGGTGATTGGAGAGGGATCTCGAGGAACTACGTGAAAACTCGGACGCCCACACAGGTCGCGAGCCATGCTCAGAAGTACTTTCTCCGGCGAACCAACCTCAACCGCCGACGCCGTAGATCCAGCCTTTTCGATATCACCACTGACACGGTCTCTGCAATCCCAACGGAAGAAGAACAGATCCAGCATCAAGACTATGCACTTTCTCATTCAAATCCAGTGTGCCCTGCAACCCCTGAAACTACCAACATGAATGGATTCCCTATGATGCCAGTATATCCAATGGGTGTTGGTTCTGGAATGATTTCAGTCCCAGTTTCGAATCAAATAGGAACGGTGAACGGTAACGGGCAACCCCAGCAGCTAGTCCGATCAATTACTGTTCTTTCACATCCTCAAGCCTCTGGTGCGTCTAATTTCACATCAAGTTCAAGTTCAGCTGTTGATCCACCAACCTTGTCTCTCGGGTTATCCTTGTCTTCCTCTGATCAAAGACAAACAACTTCAACAAGGCATTCATATATACTTGCCACAATGCCATGTTTCAACAATGGAGATAACATCATAAGTGTTGCCTGA 909 0.495 MSHTCAAAYSAVSADGDGSTGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDAANNNNGNKEDALAAGYASANEATAHNSGRHRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDTVSAIPTEEEQIQHQDYALSHSNPVCPATPETTNMNGFPMMPVYPMGVGSGMISVPVSNQIGTVNGNGQPQQLVRSITVLSHPQASGASNFTSSSSSAVDPPTLSLGLSLSSSDQRQTTSTRHSYILATMPCFNNGDNIISVA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0892 302 SUPERFAMILY Homeodomain-like 88 142 IPR009057 -
Lele20g0892 302 Gene3D - 92 144 - -
Lele20g0892 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Lele20g0892 302 SMART sant 90 140 IPR001005 -
Lele20g0892 302 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Lele20g0892 302 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Lele20g0892 302 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Lele20g0892 302 MobiDBLite consensus disorder prediction 73 92 - -
Lele20g0892 302 MobiDBLite consensus disorder prediction 78 92 - -
Lele20g0892 302 FunFam transcription factor MYB1R1 92 143 - -
Lele20g0892 302 CDD SANT 93 138 IPR001005 -
Lele20g0892 302 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Lele20g0892 302 PANTHER TRANSCRIPTION FACTOR KUA1 4 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0892 Lele-ChrLele20 15339104 15340734 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele20g0892 Myb_DNA-binding 1.6e-11 CL0123