Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0881 ATGTCCGAAGGATCTCCCTCTCCTCCTCCGATTTCCGGCGAACCCTGTAACCGATCCTTGCCGGAACCAAATTCCGAAAACCACGTCCCTGATTCCCAAAACGGGGTTGCAACTTCTAAGGAAGAAACGACAACCGCGCCTACCACTACGAGGAGCAACCGGCCATCACGCGCGTGCACCATTCGCTCTGCTTCTCGTCTCTATTCATCGGTGCAGCCGGCGATCCAACGGAAGTCCAAAGAGGCAAAGAAGGAGGAGAAGCAGGAGGACTCAACGCAGCAGCAATGCAGAAAGATCGTGACGCCGTTAGTAGAACCGCCTCCACTTCCGCAGTTGCCTCGGTGGAACCTGCGGTCCAAGTGGGAATTAGCTTCTGTACTCAATTTCTTGCATGTATTTAGGCCTCTCTTAAACATCTCCGTAGAATTCTCAGCTGAAGAATTTGAGACAGCTCTGCTTATACCCAATGACACATTGAGTGATATACATATGCCGTTGTTAAAGGTTGCTGATGGGGATGTTCCAATTGTTGCTTCACATGGGGCGGAGGTTGAAGCATATAAATCACTTGATCCCGGGCTCCGTGTTGTCATCTTAAAAGCTTTATGTGACATTCGTGTTGAGTGGCTTAATAATCCGATTGATATTTCGCAGCAAGAAGATATCAGAAGTTACATTGACAACTCACTGAGACATGGTGTTCAACTATCAACATTTCGAAAAGAGCGTATTGGGGGTGATTCTCATGGAATTTCTTATTGGTATGAAGATGACCCAATTATTGGTCATAGGTTATATCGCGAAATAAGGAACACTGAAGTAGTTCAAGTGAAGAAGGGAAAGCCAAAAGGTTCAAAGGTTGTTTCTAATACATCATATCGGTGGGAAGCTGTTGCTACCAATTTTGATGAATTTCAAGACGTTTCTTGGAGGGGTGTTGAAGAAGAAATGACTGAGAATTTTATTATGTGGATGTTGCATTCTTCATTAGCATTAAGTAATGAGAAGCTTTGCTCAAGTAGAAATAGAACTGAGGCTTCTCTAGGGAAAAAGCTGAAGATAGACATGCTTCCGGATATTGAGAAAGTGCACAAGAGGAAGGAGAGGTTGCTGAAAAAGCAACACAGACAGGCTCTTCTTCTTGATAATTTCTTAGGGGTTGATGGCCTTGCTACTGGGCGTTCACTTCGTGATAGGAAGCCTGTTACTTACGCATTTGGTGTACCTCTAGGCGCTGATGTAGGCTAA 1248 0.4503 MSEGSPSPPPISGEPCNRSLPEPNSENHVPDSQNGVATSKEETTTAPTTTRSNRPSRACTIRSASRLYSSVQPAIQRKSKEAKKEEKQEDSTQQQCRKIVTPLVEPPPLPQLPRWNLRSKWELASVLNFLHVFRPLLNISVEFSAEEFETALLIPNDTLSDIHMPLLKVADGDVPIVASHGAEVEAYKSLDPGLRVVILKALCDIRVEWLNNPIDISQQEDIRSYIDNSLRHGVQLSTFRKERIGGDSHGISYWYEDDPIIGHRLYREIRNTEVVQVKKGKPKGSKVVSNTSYRWEAVATNFDEFQDVSWRGVEEEMTENFIMWMLHSSLALSNEKLCSSRNRTEASLGKKLKIDMLPDIEKVHKRKERLLKKQHRQALLLDNFLGVDGLATGRSLRDRKPVTYAFGVPLGADVG 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0881 415 Pfam DDT domain 125 169 IPR018501 -
Lele20g0881 415 MobiDBLite consensus disorder prediction 18 76 - -
Lele20g0881 415 Coils Coil 75 95 - -
Lele20g0881 415 MobiDBLite consensus disorder prediction 1 103 - -
Lele20g0881 415 MobiDBLite consensus disorder prediction 77 93 - -
Lele20g0881 415 PANTHER REMODELING AND SPACING FACTOR 1 50 168 IPR028938 GO:0006355|GO:0031213
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0881 Lele-ChrLele20 15287927 15292036 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele20g0881 DDT 1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0987 17 20720096 20727028 Lele20g0881 20 15287927 15292036 hybridization
Lele18g0546 18 3215243 3220907 Lele20g0881 20 15287927 15292036 hybridization