Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0854 ATGGAGTTTGTTCTGCGCAGATCTGGCCAACAAGAAGGTGGACCAGTCAAGGAAGAGAAGAGAACTGAATCTGCTGCTGCTCATAATCATGAAGCTCCTTCTCATCTTAAAGAAGATACTGCTCTTGTCCAGGTGCCACCCATGAATAGATCCGCCGTGGACACTGGACCACCTCATGCATCCTCATCAGCCAAAAAGGTTGATGAACTTGAATCAGCAAGAGTTGAAATGGGTGAGGTGAGAGAAGAAAACCAAAGGCTAAAGATGTGTTTGGACCGAATCATGAAGGAATACCAGGCTCTGCAAATTCAATTCCACGTTATGGCTCAACAAGAAGAAGCCACCACTAAATCTTCTCATCAAAACAATCAAGAGCCACCACCTGAGGAATCCGATCTGGTCTCACTCAGTCTTGGTCCAAAATCTGACGAAAAACCTAATAAAGTCATCAGCTCCAAACCACCACCATTACATTTACAGAGACAAGGAGGAGGAGGAGAAGAAGAAGAATTGAAACAAGACTTGGCTCTTGGACTGGATTGCAAATTTGAAACAGCAAAATCTGGAAGCAGCCCTGAAGCTTTGCCCAACAATAATGCAAGCTCACCCAATAGCTCTGAATTAGTTCACAAGGAAGAAGCTGGCGAGAGTTGGCCACCAAGTAAGGCACTTAATAATAACAAAACTCCCCGAGATTCCACAGATCAAGATGAAGTTTCCCAGCAAAATCCTGCAAAGAAGGCCAGAGTTTGTGTTAGAGCAAGATGTGACACCCCAACTATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAAATATCCAAGGGAAATCCTTGTCCTAGAGCTTACTATCGTTGCACAGTTGCACCAAATTGTCCGGTGCAAAGATGCGCAGAGGACATGTCGGTTCTGATCACTACCTATGAAGGAAACCACAACCACCCTCTTCCTCTCTCTGCTACTGCTATGGCTTCCGCCACTTCTGCAGCTGCTTCCATGCTCTTGTCTGGTTCATCTTCAACCTCTAATCTCCCCGGTTCAGTGCCGTCTTCATCAGCAGCCACCGATGCGGCCACCACCATTGGCTCTGAACTTCACGGCATCAACTTCTACCTCTCAGATGGCTCAAAACCAAGGCAATTCTACGTCTCCAATCCTGCACTATCACCCTCACCATCACACCCAACAATTACCCTTGACCTCACTTCCAATCCTTCCTCTTCAAATTATTTGTTGTCCCACTTCAATAGATTTAACTCAAACTACAATAACAACCCACCCAGATTCCCTTCTTCTACCAGTACCCTCAGCTTCAGTTCCTCAGAATCCAATCCAATGTCGTGGAGCAACAATGTGGGATTCCTGGGTTACAACTACAACACGATTCAACCATGTAATAATAACAGGAACATATTTAGCAGCATCAACCTCGGAAGACAACTACCGATTCCAACTGCCCCTCCTCCTCCTCCTCAAGGACCTCAAAATCCTTCACTGCCAGACACCATAGCTGCAGCAACTAAAGTGATCACAACTGACCCATCTTTTCAGTCAGCTTTGGCAGCGGCACTTACTTCCGTTATCGGCACAGGAAATAGTAGTGGTAGTGTTAGTGGGAATAGTACACAAGATGTTGGAGAAATCAACTTGGGTCATAAAATTAACCTAAGGGAAGATATTTTTGCATCCGGGTCAGCTTCCAAAGTCACCGGACGTGGTTCAAGTTTCTTGAGTAGTAAAACGACGCCGGCAGGAACACAAGCTGCAGCAAGTAGTGGTTTGATGTTTCTACCTCCATCTTTGCCATTTTCTAGCTCTAAGACCGCATCTGCGTTATCTCCTGCTGATAATAGAGACAAGTCCAATTCGTGA 1875 0.4549 MEFVLRRSGQQEGGPVKEEKRTESAAAHNHEAPSHLKEDTALVQVPPMNRSAVDTGPPHASSSAKKVDELESARVEMGEVREENQRLKMCLDRIMKEYQALQIQFHVMAQQEEATTKSSHQNNQEPPPEESDLVSLSLGPKSDEKPNKVISSKPPPLHLQRQGGGGEEEELKQDLALGLDCKFETAKSGSSPEALPNNNASSPNSSELVHKEEAGESWPPSKALNNNKTPRDSTDQDEVSQQNPAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPNCPVQRCAEDMSVLITTYEGNHNHPLPLSATAMASATSAAASMLLSGSSSTSNLPGSVPSSSAATDAATTIGSELHGINFYLSDGSKPRQFYVSNPALSPSPSHPTITLDLTSNPSSSNYLLSHFNRFNSNYNNNPPRFPSSTSTLSFSSSESNPMSWSNNVGFLGYNYNTIQPCNNNRNIFSSINLGRQLPIPTAPPPPPQGPQNPSLPDTIAAATKVITTDPSFQSALAAALTSVIGTGNSSGSVSGNSTQDVGEINLGHKINLREDIFASGSASKVTGRGSSFLSSKTTPAGTQAAASSGLMFLPPSLPFSSSKTASALSPADNRDKSNS 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0854 624 MobiDBLite consensus disorder prediction 220 243 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 186 250 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 481 501 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 568 590 - -
Lele20g0854 624 SUPERFAMILY WRKY DNA-binding domain 254 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele20g0854 624 MobiDBLite consensus disorder prediction 111 171 - -
Lele20g0854 624 Gene3D WRKY domain 245 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele20g0854 624 MobiDBLite consensus disorder prediction 111 130 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 190 208 - -
Lele20g0854 624 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 541 IPR044810 GO:0003700
Lele20g0854 624 SMART WRKY_cls 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele20g0854 624 MobiDBLite consensus disorder prediction 483 498 - -
Lele20g0854 624 ProSiteProfiles WRKY domain profile. 256 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele20g0854 624 MobiDBLite consensus disorder prediction 1 71 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 12 37 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 605 624 - -
Lele20g0854 624 MobiDBLite consensus disorder prediction 567 590 - -
Lele20g0854 624 Pfam WRKY DNA -binding domain 262 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0854 Lele-ChrLele20 15152925 15156673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0854 77 531 WRKY Transcription Factor Family AT5G15130 39.300 6.35e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele20g0854 WRKY 3.4e-18 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0967 17 20594779 20597934 Lele20g0854 20 15152925 15156673 hybridization
Lele18g0566 18 3345424 3349145 Lele20g0854 20 15152925 15156673 hybridization