Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0849 ATGAACTTAAGAGCGCTACTAAAAACTTTGGTCCGATGGTCTAATAGGGCAAGTGGCTTTAGTCATGTCCACAAGGGGTGGATTGATGCGCAATCCCTTAGTGCTACTAAGCCTGGATCTGGAATGGTTGTGGCCGTGAAGAATTTGAAACCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGAGGGATTACAGTCACTTTCTTGGGCAACAAGGATCAAAGTTGCCATTGCCGCTGCTCTGTGGTCTCGCCTTTCTGCATGACTCCAATCCACAAGTTATCTACCGTGATTTTAAGGCTTCACATGAATTTAATGCAAAACTCTCAGACTTTGGGTTGGCTAAAGAAGGACCAACCGGTGATCGTACTCATGTTTCAACTCAAGTCATGGGTACTCACGGCAACGCTGCTCCTGAATATATTGCTACAGCCCGTCGTAATTGTTCAATTACAAGAAATTCAGTTTCAATTTCTGGTATGATGACAGGAAAATCAATTTCAAGTCGAAGCATTCCCGCTCGAATTACTCAACTCCCATATTACGAAAGCTTATTCTTCCTATTGGAAAGATGCAAAGGGAAGCGGCAACTCAATCAAATTCATGCACTTTCGATCATTTCAGGTCTCATTCGAAAGCCCTCTTTAGCAAGCAAACTTGTTGCGTCTTTTGCCTTGAGCCCCCTTCCTGGCACTACCTCTGTAGCCCATGCAATCGCTGATCGTATTCAAGGTCTTGATACTTACACTTGGAACACAATCGCCAGAGGTTATTTGGAGGCAAATAAACCCGAAGAAGCCTTTTCAGTTTATTCCCTCTTAAGAAGAAGAGCCTTGAGGGTTGATAGTTACACCCTTCTATTTGCAATCAAAGCGTGCGAGATTAACATAATTCAAGGGGAGCAGTTGCACGTTCAAGTGTACAAACTGGGATTCTCGCATAAGCTTATAATCCGAACTGCAATTATGCAAATGTATGCGTCGTATGATAGGATTTCTCACGCGGAACAAGTGTTCGATGAAATGACCCAAAGAGATTTGGTTATGTGGAATTCCCTTATTGCTTTATATGCTCAAAAGGGTTTCCCTTTGAAAGCACTTCAAGGTTTGCATAGTATGGTCACGAATAATATTCGGTCTAATGAGGTGACCGCAGCAAGTGTTCTTTCTTCTTGCTCTTCAATGAAAGCACTGAAAGAGGGCAGAGTAGTTCATGGTTATGTGATCAGAAATCTCTGCCATTTTGATATTTTTCTCAACAATGCCTTGATTGGAATGTATTCATATTGTGGGGATCTTTCAAAAGCCCTCCTCATCTTTCAATTGATGCCTTCGAGAAATGTGGTTTCGTGGACATCAATGGTCAAGGGTTATGTTGATAACAACTGTCCACATGATGCGCTGAATCTGTTCTCCAAGATGGAATCTGAAAACATAAGACCAGAAGAGGTTACCGTGTTAGAGTTAATTTCAATGTGCTCCAAATTGGGACGCTTTGAACTTGGACTACAGATTGAAGACTATCTAGAGAAGAACACGATTAGTAAAGAGAATCCGTCTATTGCAAATGCTTTAATGGACATGCATGCCAAATGTGGTAATATGAAGAATGCCTGCCAAATTTTTGATGGGATAGTGCAGAAAACTCTAGTAACCTGGACTACAATCATTAATGGGTTAGCAAGGCATGGCCATGGCATGCCGGCATTAGTCCGATTCCGTCAGATGCAAAGGGAAGGTTTTAAACTAGATGGTGTCATCTTCCTCAGCATATTATCTGCTTGTAGCCATGCAGGTTTAGTAGATGAGGGATTGAAATGTTTTGAATCAATGATTAATGATTATCATATAGAGCCATGGATGGAGCACTACGGAAGTATTGTGGATCTTCTATGCAGGGCGGGACTAGTGAAAGAGACATTAGACTTTGCTGAGGCAATGCCATTAAAACCAGATACTGTGGTGTGGCGAATGCTGCTTGGAGCATGTCAAAGGCAAAGTAACACGGAGCTAACAAATCGTGTTGCAAAGATTTTACACGAAGCTGGCCCTAAAAGTATTGAAGATTATGTACTGCTGTCTAATTCTCACGCAGCCATGGAAGGATGGAGTGATGTACAAGAACTAAGGGGAGAAATGAAGATTATGGGTTTAAGGAAGCAAGACTCGGGCAGTAGTTTGGTAGAGGTAGGTCATGCTTTGTAA 2202 0.4214 MNLRALLKTLVRWSNRASGFSHVHKGWIDAQSLSATKPGSGMVVAVKNLKPEGFQGHKEWLRDYSHFLGQQGSKLPLPLLCGLAFLHDSNPQVIYRDFKASHEFNAKLSDFGLAKEGPTGDRTHVSTQVMGTHGNAAPEYIATARRNCSITRNSVSISGMMTGKSISSRSIPARITQLPYYESLFFLLERCKGKRQLNQIHALSIISGLIRKPSLASKLVASFALSPLPGTTSVAHAIADRIQGLDTYTWNTIARGYLEANKPEEAFSVYSLLRRRALRVDSYTLLFAIKACEINIIQGEQLHVQVYKLGFSHKLIIRTAIMQMYASYDRISHAEQVFDEMTQRDLVMWNSLIALYAQKGFPLKALQGLHSMVTNNIRSNEVTAASVLSSCSSMKALKEGRVVHGYVIRNLCHFDIFLNNALIGMYSYCGDLSKALLIFQLMPSRNVVSWTSMVKGYVDNNCPHDALNLFSKMESENIRPEEVTVLELISMCSKLGRFELGLQIEDYLEKNTISKENPSIANALMDMHAKCGNMKNACQIFDGIVQKTLVTWTTIINGLARHGHGMPALVRFRQMQREGFKLDGVIFLSILSACSHAGLVDEGLKCFESMINDYHIEPWMEHYGSIVDLLCRAGLVKETLDFAEAMPLKPDTVVWRMLLGACQRQSNTELTNRVAKILHEAGPKSIEDYVLLSNSHAAMEGWSDVQELRGEMKIMGLRKQDSGSSLVEVGHAL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0849 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 185 731 - -
Lele20g0849 733 Pfam PPR repeat family 445 492 IPR002885 -
Lele20g0849 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Lele20g0849 733 Pfam E motif 666 726 IPR046848 -
Lele20g0849 733 FunFam Pentatricopeptide repeat-containing protein chloroplastic 398 499 - -
Lele20g0849 733 SUPERFAMILY Protein kinase-like (PK-like) 40 145 IPR011009 -
Lele20g0849 733 Gene3D Tetratricopeptide repeat domain 400 520 IPR011990 GO:0005515
Lele20g0849 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Lele20g0849 733 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 519 733 - -
Lele20g0849 733 Gene3D Tetratricopeptide repeat domain 255 399 IPR011990 GO:0005515
Lele20g0849 733 Gene3D Tetratricopeptide repeat domain 521 729 IPR011990 GO:0005515
Lele20g0849 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Lele20g0849 733 Gene3D Transferase(Phosphotransferase) domain 1 66 154 - -
Lele20g0849 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Lele20g0849 733 TIGRFAM PPR: pentatricopeptide repeat domain 448 480 IPR002885 -
Lele20g0849 733 TIGRFAM PPR: pentatricopeptide repeat domain 586 613 IPR002885 -
Lele20g0849 733 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Lele20g0849 733 TIGRFAM PPR: pentatricopeptide repeat domain 248 278 IPR002885 -
Lele20g0849 733 Pfam PPR repeat 585 612 IPR002885 -
Lele20g0849 733 Pfam PPR repeat 347 377 IPR002885 -
Lele20g0849 733 Pfam PPR repeat 522 545 IPR002885 -
Lele20g0849 733 Pfam PPR repeat 248 276 IPR002885 -
Lele20g0849 733 Pfam PPR repeat 319 345 IPR002885 -
Lele20g0849 733 Pfam PPR repeat 550 580 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0849 Lele-ChrLele20 15127223 15130903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0849 235 733 Glycoside Hydrolase AT3G49170 31.028 6.00e-76 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele20g0849 PPR_2 9.2e-08 CL0020