Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0846 ATGTCTGGCCAAAAAAGTTGCAGAGCTTCAAACTTCAAGGAGAATGAGATTAATGATCCTGTGTCCAAGTTACAAGCACTTCTGCCTCAACTGAACCGAAGGAATGACTCAAGGGTATCAGTGCCGAAGATCTTGAAAGAAACTTGCAGTCACATCAAGAAGCTACAGAAAGAGGTGGAAGAGCTTAGTGAAAGGCTAATAATAGGGCTGATGGATTCTGCTGACATTAGGGATAGAGAGTCTTAG 246 0.4268 MSGQKSCRASNFKENEINDPVSKLQALLPQLNRRNDSRVSVPKILKETCSHIKKLQKEVEELSERLIIGLMDSADIRDRES 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0846 81 PANTHER DNA BINDING PROTEIN 4 78 IPR044172 -
Lele20g0846 81 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 66 IPR036638 GO:0046983
Lele20g0846 81 Gene3D - 13 78 IPR036638 GO:0046983
Lele20g0846 81 Coils Coil 45 65 - -
Lele20g0846 81 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0846 Lele-ChrLele20 15107841 15108308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0846 1 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 46.250 1.21e-13 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele20g0846 HLH 7.4e-05 No_clan