Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0845 ATGGATTCCTCCAAATTCTCCCATGGCTATGGCAAAGTAGGTGATCATCTCGAAGATCAGTCCTCTTTTCCCAGATCCCCCAACCGCAAGCCCCTCGTCGCCACGATTTCTGTCTTGGCCATCCTCTTCCTTACTCTCTCTGTCGGTGTCACCCTTGTAGCTCTCATCCACTACTCCAATTCCGGACCTTTGGAATCTCGACCAACCCCTTCCACCGCCAACACCGGCGTCGCCGCCTCCATTAGAACCGTCTGCAACGTCACGAACTTCCCTGCCTCCTGCTACTCCAGTATTTCCTCCCTCCCTACTTCCCTCCAAAACCCTAACGATCCCGAATCCATTCTCAAGCTGTCTCTTCGTGTTTCATACAACGAACTCTCTAACCTGTCGTCCTCCCTCAGAACCTTGGCTTCGACCTCCAACGCCCCCGCTCTCCCAGATTGCAAGGATCAGATCGATGACGCGCTGAGTCGACTCAACGACTCGCTATCTGCCATGGATGTCTCTCCCGGCGAGAAGGCAGTGACGGATGCGAAGATCAACGACATACAGACGTGGATCAGCGCAGCGGTGACGGACCAGGAAACGTGCTTGGATGGATTGGAGGAGACAGAGTCGGCGGCACTGGGGGAGATGAAGGGGAAGACGCAGAGATCAAGGGAGTACACAAGCAACAGCTTAGCCATCGTTGCACATATTCGAATCTTACTACAACGCTTCAATATGCCCCTCCATTGA 738 0.5393 MDSSKFSHGYGKVGDHLEDQSSFPRSPNRKPLVATISVLAILFLTLSVGVTLVALIHYSNSGPLESRPTPSTANTGVAASIRTVCNVTNFPASCYSSISSLPTSLQNPNDPESILKLSLRVSYNELSNLSSSLRTLASTSNAPALPDCKDQIDDALSRLNDSLSAMDVSPGEKAVTDAKINDIQTWISAAVTDQETCLDGLEETESAALGEMKGKTQRSREYTSNSLAIVAHIRILLQRFNMPLH 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0845 245 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 234 IPR035513 -
Lele20g0845 245 PANTHER PECTINESTERASE 46 231 - -
Lele20g0845 245 Pfam Plant invertase/pectin methylesterase inhibitor 80 229 IPR006501 GO:0004857
Lele20g0845 245 CDD PMEI-like_3 83 233 - -
Lele20g0845 245 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 232 IPR035513 -
Lele20g0845 245 MobiDBLite consensus disorder prediction 1 27 - -
Lele20g0845 245 FunFam Pectinesterase 77 234 - -
Lele20g0845 245 TIGRFAM PME_inhib: pectinesterase inhibitor domain 74 232 IPR006501 GO:0004857
Lele20g0845 245 SMART PMEI_2 76 229 IPR006501 GO:0004857
Lele20g0845 245 MobiDBLite consensus disorder prediction 9 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0845 Lele-ChrLele20 15105682 15106419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0845 1 245 Carbohydrate Esterase AT1G53840 38.132 2.01e-37 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0955 17 20544178 20544915 Lele20g0845 20 15105682 15106419 hybridization
Lele18g0574 18 3398908 3399645 Lele20g0845 20 15105682 15106419 hybridization