Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0840 ATGGAGGGTGGTGATGATCTCCACCACCACCGCCACCTCCACCTCCACCACCAACACCAACACCACCACCACCGTCCCAACTTCCCATTTCAGCTTCTCGAGAAGAAAGAAGATCATCACCAAGAGCCTGCTTCTTGTTCCACTTCTTCCTCTTACCCTTCTTTAGCCATCTCCGCCGAGCCAACCACCTCCAATTGCAACCGATCCAACCAGGTTCTTAACGTCGTCCCCCCCACCTCTTCCTCCTCCGAACCCTCCAATAAGAAACCCCCGCCCAAGAGAACTTCCACCAAGGACCGACACACCAAGGTCGATGGTCGCGGCCGCCGTATCCGAATGCCGGCGCTTTGTGCGGCTCGCGTCTTCCAGCTCACCCGCGAGCTCGGCCATAAGTCCGATGGCGAAACCATCGAGTGGCTGCTCCAACAGGCTGAGCCCTCCGTCATCGCTGCCACCGGCACTGGAACGATCCCCGCTAATTTCACTTCCCTTAATATTTCTCTGAGAAGCTCCGGCTCCACCATGTCCGTCCCTTCTCAGCTCAGATCGTCTTACTTCAATCCCAACTTCTCGGTTCAGCAGCGGAGAAGCTTCTTCCCCGGAATCGGCTTGTCTTCCGATGGCAACAACACTTCAACGCTGCTGAATTTTCAGTCTAATAGTTTCTCCGGTGGTAGCATGTTGCAAGCAAAGCAGGAATTGCGCGGAGGCGAGGGAGGTGCTCCGTCGTCCTCGACAACGTTAGATTTGACGGAGGCGGAAGAAGGTATGGAGAGGAAAAGGCGACCGACGGAGCAAGAGTTGTCACCGTCTACTTCTGTACAACAATATCAAATGGGAAGTTATTTGTTGCAATCGAGCACGGGGGCGAGTACGACAAGCCACGCACAGATTCCAGCCAATATATGGATGGTGACGAATTCTAATAATCAAGTTATGAGCGGGGATCCTATATGGACATTCCCGTCGGTGAATAACAGTTCTTTGTATAGAGGCGCCACCATGTCCAGTGGGTTGCATTTTATGAACTTCCCTACTCCTATGGCGTTGTTGCCTGGTCAACAATTAGGGTCTTCTGGGATTGGTGGCGGCGGAGCTGGGAACATAAACGAGGGACATTTGAGTATGCTAGCCGGCGTCAACCCATACCGGCCGGTGAGTGGAGTTTCGGAGTCTCAGGCAAGTGGGTCTCAATCACATCATGGAGGTGGAGGAGGCGACGATCGACACGATACAAACAGTCACCACTCCTAA 1254 0.5367 MEGGDDLHHHRHLHLHHQHQHHHHRPNFPFQLLEKKEDHHQEPASCSTSSSYPSLAISAEPTTSNCNRSNQVLNVVPPTSSSSEPSNKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQQRRSFFPGIGLSSDGNNTSTLLNFQSNSFSGGSMLQAKQELRGGEGGAPSSSTTLDLTEAEEGMERKRRPTEQELSPSTSVQQYQMGSYLLQSSTGASTTSHAQIPANIWMVTNSNNQVMSGDPIWTFPSVNNSSLYRGATMSSGLHFMNFPTPMALLPGQQLGSSGIGGGGAGNINEGHLSMLAGVNPYRPVSGVSESQASGSQSHHGGGGGDDRHDTNSHHS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0840 417 MobiDBLite consensus disorder prediction 10 25 - -
Lele20g0840 417 MobiDBLite consensus disorder prediction 44 90 - -
Lele20g0840 417 MobiDBLite consensus disorder prediction 386 400 - -
Lele20g0840 417 MobiDBLite consensus disorder prediction 91 107 - -
Lele20g0840 417 ProSiteProfiles TCP domain profile. 97 151 IPR017887 -
Lele20g0840 417 MobiDBLite consensus disorder prediction 1 25 - -
Lele20g0840 417 MobiDBLite consensus disorder prediction 252 266 - -
Lele20g0840 417 MobiDBLite consensus disorder prediction 403 417 - -
Lele20g0840 417 MobiDBLite consensus disorder prediction 230 275 - -
Lele20g0840 417 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 407 IPR005333 GO:0003700
Lele20g0840 417 MobiDBLite consensus disorder prediction 37 107 - -
Lele20g0840 417 Pfam TCP family transcription factor 95 262 IPR017887 -
Lele20g0840 417 MobiDBLite consensus disorder prediction 384 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0840 Lele-ChrLele20 15080256 15081509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0840 88 411 TCP Transcription Factor Family AT3G47620 44.552 2.96e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele20g0840 TCP 4.6e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0951 17 20520375 20521598 Lele20g0840 20 15080256 15081509 hybridization
Lele18g0578 18 3418187 3419494 Lele20g0840 20 15080256 15081509 hybridization