Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0838 ATGGGAAGGCCACCTTGCTGCTACAAAATTGGGATCAAGAAGGGCCCTTGGACTCCTGAAGAAGACATCATTTTGGTCTCTTATATTCAAGAACATGGACCTGGTAATTGGAGATCTGTTCCCACTAAAACAGGTCTGATGAGATGCAGTAAAAGTTGCAGACTTCGATGGACCAACTATCTTCGTCCTGGTATCAAAAGGGGAAACTTCACCGATCATGAGGAGAAGATGATCATCCATCTCCAAGCTCTGCTCGGCAACAGATGGGCTGCGATAGCTTCTTATCTTCCACAGAGGACGGACAATGACATAAAGAATTACTGGAACACCCATTTGAAGAAGAAGCTGAAAAGGCTCCAAACTGGGAGTGAGGGTGACGAACAAGAAGACGAGTCGGTGGCACAGCCCAAGGGCCAGTGGGAGAGAAGGCTTCAGACAGATATCCACATGGCCAAACAGGCTCTGCGCGAGGCTCTTTCCCTCGACAAGCCAACCAAAACTGAAACCGAAACCGAAACCGAAACAGAAAACGAAAACAAGCCCTCTAATCCCACAATCCAAGCATCCCCTTACGCATCAAGCACCGAAAACATAGCCCGATTACTCCAGAACTGGATGAACAAATGCCCAAAGGACCCAACACAACAACCAAATTCACCAGCAGGAGCTCGCTTCATCAACACAGGTTCCAGTTCGTCGAGCGAAACGGCGACGTATAGTAACACCAATGTTCTAGATTCTCTATGGAGCTTCAACTCTGATACTTCACAACAATCAGTGTCTGTGGACGACAACGCCAACAACAACAGCATGTTCCAAGACGAAAGCAAGCCGACGAGCTCGGAGTCGCATCAGCTTCCTCTGACTCTAATCGAGAAGTGGCTCTTGTTCGACGACGGCGTAGCTCAGAACCAGGATGACCTAATCAACGACTCGCTTATGGAAGAAACCACCCCACAATTGTTCTAG 969 0.483 MGRPPCCYKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTKTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRLQTGSEGDEQEDESVAQPKGQWERRLQTDIHMAKQALREALSLDKPTKTETETETETENENKPSNPTIQASPYASSTENIARLLQNWMNKCPKDPTQQPNSPAGARFINTGSSSSSETATYSNTNVLDSLWSFNSDTSQQSVSVDDNANNNSMFQDESKPTSSESHQLPLTLIEKWLLFDDGVAQNQDDLINDSLMEETTPQLF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0838 322 MobiDBLite consensus disorder prediction 257 283 - -
Lele20g0838 322 Gene3D - 68 143 - -
Lele20g0838 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele20g0838 322 SMART sant 66 114 IPR001005 -
Lele20g0838 322 SMART sant 13 63 IPR001005 -
Lele20g0838 322 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele20g0838 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele20g0838 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele20g0838 322 FunFam Transcription factor MYB30 68 126 - -
Lele20g0838 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 263 - -
Lele20g0838 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele20g0838 322 MobiDBLite consensus disorder prediction 159 177 - -
Lele20g0838 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele20g0838 322 FunFam MYB-related transcription factor 13 66 - -
Lele20g0838 322 MobiDBLite consensus disorder prediction 208 237 - -
Lele20g0838 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele20g0838 322 MobiDBLite consensus disorder prediction 119 141 - -
Lele20g0838 322 MobiDBLite consensus disorder prediction 156 191 - -
Lele20g0838 322 CDD SANT 16 61 IPR001005 -
Lele20g0838 322 Gene3D - 13 66 - -
Lele20g0838 322 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0838 Lele-ChrLele20 15057657 15058825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0838 1 299 MYB Transcription Factor Family AT5G62470 52.436 1.06e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele20g0838 Myb_DNA-binding 5.6e-15 CL0123