Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0822 ATGGAGACTGAGGAAATTACTTTGAACATTGAATCTGTTGTTGGTGCTGGAAATAATAGTAAGAGCGGTGATGGATTCATTGATAGAAGCAAAGTCAGGATTTTGTTATGTGACAACGATGCCAAGAGTTCGGAAGAGGTGTTTACGCTTCTCGTGAAGTGCTCTTATCAGGTTACTTCAGTGAGGTCAGCGAGACAGCTCATTGATGCATTGAACGCAGAAGGGCAAGACATTGATATCATACTTGCTGAAGTTGACCTGCCTATGAAGAAGGGTTGGAAGATGTTGAAGTACCTTGCACGAGACAAGGAACTGCGCCGGATCCCTGTTATAATGATGTCGGCACAAGATGAGGTATCCATCGTTGTTAAGTGCTTAAAACTCGGAGCAGCTGACTATCTAGTAAAGCCTTTACGGACTAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAACTATGACTTCGACCTGGTTGTATCAGATCCTAGTGACGCTAATACAAACAGTACCGCCTTGTTCTCAGATGACACAGATGACAGGTCCAAGAGAAGCGCTAATCCCGAGAAGGCAATGTCTATCCAACAGGAATATGAGTCGACTGTTGCTGTTGCCTCTGCTGTTGTAGTTGTTGAGGAGCTTCCAAATGCTCAAGCATCAGAATATCGCCCTGAAGTGCCTGGAATTAGTGATCGCCGAACTGTTGCAGGACATTTTTTGGCTGGTCCGAAGAAGAGCGAACTTAAGATTGGGGAGTCATCAGCCTTCTTCACTTATGTCAAAGGAGCCGCAATGAAGAGCAACTTCCAACCAGTCATTAATGTTGCGCATAACCCTGCTACGCATTTGACAACGGAAGATACACATCAAACATGCACTGAACAAGGAGTCAATGATCTTCAAATACATGAAAGTGGAGAGACATGTGAAAGCCATTCACAGGATGACTTGCCCAGCAGTAACAGCATCCCGGATTCTTTCTCCATCGAAAGGTCTTCGACTCCTCCTGCATCAATGGAAACTTCACAGCAAAAACACTTCATGGAAGAACCTTTACCTCAGGGTATGATCCATCCAAGAAATGGAACTCATAATTCTGAACATGAAGTATCCGGCATGCCAGGCCAACAACATCATTATCCATATTATATTTCAGGGGTTGTTAATCCCACTATGATGCCATCGTCAGCACAATTGTACCAGAAGAATCTCCAGGACCTGCAGGCCCATGCTGGTACAGCTATCATTGCACAATACAATCATCTTTCACAATGTCCTCCTCATACGACGGGTGTGACATCATTTCCGTATTACCACCCGATGGGTTTGTGCTTACAACCTGGACAGATGTCTACCGTTCATTCATGGCCATCATTTGGTAATTCGAGTTCATCTGAAGCCAAAATAAGTAAAGTTGATAGAAGAGAAGCAGCGTTGATGAAGTTTAGGCAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATAGGAAACGACTTGCTGAAAGACGGCCGCGAGTGAGAGGACAGTTTGTTAGAAAGTTGAATGGCGTGAATGTAGACCTTAATGGCCAACCTGCTTCCACTGACTATGATGAGGATGATGAAGAAGATGAAGACGATAATGCAGCGCGAGATTCCTCTCCTGAGGACGTTTGA 1707 0.4417 METEEITLNIESVVGAGNNSKSGDGFIDRSKVRILLCDNDAKSSEEVFTLLVKCSYQVTSVRSARQLIDALNAEGQDIDIILAEVDLPMKKGWKMLKYLARDKELRRIPVIMMSAQDEVSIVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTALFSDDTDDRSKRSANPEKAMSIQQEYESTVAVASAVVVVEELPNAQASEYRPEVPGISDRRTVAGHFLAGPKKSELKIGESSAFFTYVKGAAMKSNFQPVINVAHNPATHLTTEDTHQTCTEQGVNDLQIHESGETCESHSQDDLPSSNSIPDSFSIERSSTPPASMETSQQKHFMEEPLPQGMIHPRNGTHNSEHEVSGMPGQQHHYPYYISGVVNPTMMPSSAQLYQKNLQDLQAHAGTAIIAQYNHLSQCPPHTTGVTSFPYYHPMGLCLQPGQMSTVHSWPSFGNSSSSEAKISKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVNVDLNGQPASTDYDEDDEEDEDDNAARDSSPEDV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0822 568 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Lele20g0822 568 Gene3D - 32 235 - -
Lele20g0822 568 MobiDBLite consensus disorder prediction 182 204 - -
Lele20g0822 568 MobiDBLite consensus disorder prediction 319 357 - -
Lele20g0822 568 MobiDBLite consensus disorder prediction 325 357 - -
Lele20g0822 568 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 330 IPR045279 GO:0009736
Lele20g0822 568 SUPERFAMILY CheY-like 28 158 IPR011006 -
Lele20g0822 568 MobiDBLite consensus disorder prediction 534 568 - -
Lele20g0822 568 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Lele20g0822 568 ProSiteProfiles CCT domain profile. 488 530 IPR010402 GO:0005515
Lele20g0822 568 MobiDBLite consensus disorder prediction 544 568 - -
Lele20g0822 568 Pfam CCT motif 488 530 IPR010402 GO:0005515
Lele20g0822 568 SMART REC_2 32 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0822 Lele-ChrLele20 14927659 14931673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0822 21 567 Response Regulator Gene Family AT5G61380 50.158 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele20g0822 Response_reg 3.5e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0932 17 20377812 20381923 Lele20g0822 20 14927659 14931673 hybridization
Lele18g0597 18 3571290 3575165 Lele20g0822 20 14927659 14931673 hybridization