Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0819 ATGGCGGAAGAATCGCCTTCTTCTTCTTCTTCAGTTGTGCTTACCATGGATGGCCTTGACGACGTCGAAAACTACGTTTGGGCACATGAACAAGGAGGTCTGGCATGGGACACATACCATCATATTTTTGAACTTGTGCAAAATGGCAACTTGTCATTTCGGGAGAATCGGTTGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAACCTGGTGATCCTGTTATCCTCAGCAACCGATGTGCAGCTTATCTTAGGATTAGCAAATTGTTAAAAGACAGATCTCCATCAGCTTCTGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTCTGTTTGAAGGATGCTGGGAAGCTTGTTGACCTGAAGAGTAATTCAGTAAGATCATACCTCTTAAAGGCTAATGCACTTTTTCTGTTAGAGAAATATGAAAAAGCCCGAGATGCTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGCGATTCCTTGCGAGCTTCACTTAAAAGTTTGGATGCAGTATCTGCTAGTTTGATGGGGATGAGTAGACATGGACAGCCAGGGACGAGTACTCATAGACAACCGGAGCGCAATGATGACTTTGATTGCACTGTTTGCCTGAAGTTGTTATACGAACCCGTTACAACCCCTTGTGGACATTCTTTTTGCCATTTATGTCTATTTCAGTCGATGGATCATGGCAACAGATGCCCATTGTGCAGGACAGTTCTTTTTATCAGTCCTCGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACGAAAGACCTTTCCGGAAGAATATGCGAAAAGGAAGCAAGAGCATGAAAGTTTGACCAACTTTGGCGTAGATTTGATTCCTCTATTTGTCATGGATGTTGTCATGCCATGTCAAAAGTTCCCACTCAATATATTTGAACCTCGATATAGACTTATGGTGAGAAGAGTAATGGAAGGGAATCATAGGATGGGAATGGCTATAATTGATTCTACAACAGGTTCCTTAGCTGAGTATGCTTGTGAAGTGGAAATCACAGATTGTGAGCCACTTCCGGATGGGCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATTCGGTCTCGGGATCAAGATGGGTATCGTGTAGCAGAGGTTGACTGGATACAGGATATCATGCCTCCAGAAGGCAGTTTAGAGAAACAGTATTTACAGGAATTGACGTATGATGCTGCTGAAACTGCAAGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGAGCAAAACAAGATCAAAGAAGACTTGAGAGAATCCACTCCGTTGAATTGATGATGCCCAGTCCAAAAGATCCAGAGCTCTTCAGTTTTTGGCTTGCTTCCTTGTCAAAGCTGAGGCCTCTAGAAAGATTAGATCTTATGGGCTTAAGAGACACTAGAGAGAGGATTAAACGTGGGCTGAATTATCTGCGAGCAGAGGAGCAACGCTGCAGAATTCAATGA 1503 0.4251 MAEESPSSSSSVVLTMDGLDDVENYVWAHEQGGLAWDTYHHIFELVQNGNLSFRENRLEEAINFYSRANSIKPGDPVILSNRCAAYLRISKLLKDRSPSASEYKPLSGLDPTIHAELCLKDAGKLVDLKSNSVRSYLLKANALFLLEKYEKARDAILSGLQVDPFSDSLRASLKSLDAVSASLMGMSRHGQPGTSTHRQPERNDDFDCTVCLKLLYEPVTTPCGHSFCHLCLFQSMDHGNRCPLCRTVLFISPRTCSISVTLKNIIRKTFPEEYAKRKQEHESLTNFGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRVMEGNHRMGMAIIDSTTGSLAEYACEVEITDCEPLPDGRFYIEIESRRRFRIIRSRDQDGYRVAEVDWIQDIMPPEGSLEKQYLQELTYDAAETARSWIRRAKEAARAKQDQRRLERIHSVELMMPSPKDPELFSFWLASLSKLRPLERLDLMGLRDTRERIKRGLNYLRAEEQRCRIQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0819 500 Pfam ATP-dependent protease La (LON) substrate-binding domain 292 490 IPR003111 -
Lele20g0819 500 ProSiteProfiles Lon N-terminal domain profile. 289 492 IPR003111 -
Lele20g0819 500 SMART ring_2 208 245 IPR001841 -
Lele20g0819 500 Gene3D - 427 492 - -
Lele20g0819 500 Gene3D Tetratricopeptide repeat domain 41 178 IPR011990 GO:0005515
Lele20g0819 500 Pfam Zinc finger, C3HC4 type (RING finger) 208 245 - -
Lele20g0819 500 SUPERFAMILY TPR-like 43 169 IPR011990 GO:0005515
Lele20g0819 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 288 IPR013083 -
Lele20g0819 500 ProSiteProfiles Zinc finger RING-type profile. 208 246 IPR001841 -
Lele20g0819 500 SUPERFAMILY PUA domain-like 292 490 IPR015947 -
Lele20g0819 500 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
Lele20g0819 500 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Lele20g0819 500 PANTHER RING FINGER PROTEIN 127 33 492 - -
Lele20g0819 500 SUPERFAMILY RING/U-box 203 270 - -
Lele20g0819 500 Gene3D - 290 392 IPR046336 -
Lele20g0819 500 SMART tpr_5 42 75 IPR019734 GO:0005515
Lele20g0819 500 SMART tpr_5 133 166 IPR019734 GO:0005515
Lele20g0819 500 SMART lon_5 291 492 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0819 Lele-ChrLele20 14909457 14914286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0819 194 249 C3H Transcription Factor Family AT1G74990 35.593 1.07e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0929 17 20362291 20367452 Lele20g0819 20 14909457 14914286 hybridization
Lele18g0601 18 3587738 3592606 Lele20g0819 20 14909457 14914286 hybridization