Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0816 ATGGGTTGTGTCTATTCCAGGCAGCCGGTATCGGTGACGCCGGCGATTGATCACTCCGATCTGTTTCGGGGCAATGGGGGTCTGGGGTATTCCGGAAGAAGCTTGGGGGAATTGGATGGCAAGAAGAAGAAGAAGAAGAAGAAGAGTGACTTGGTGGGCGAGTCTGAGAGAGAGAGCTCAAACTGGGGATGTGATGAATCTCTAAGCTTCAGATTGGGGAATCTCCAGAAGTATGTTGAAGGAGAGCAAGTGGCCGCCGGTTGGCCGGCGTGGCTCACCGCCGTCGCCAGCGAAGCCATTCACGGATGGGTTCCCCTCCGAGCCGACGCATTTGAGAAGCTGGAGAAGATTGGGCAGGGAACATACAGTAGTGTATTTCGGGCGAAGGAACTTGGGACAGGGAAGATAGTAGCACTGAAGAAGGTGAGGTTTGACATATTTGAGCCAGAAAGTGTGAGATTTATGGCACGAGAAATAATGATTCTTAGAAGACTTGATCATCCAAACATCATAAAATTGGAGGGTTTGATTACTTCCAAATTGTCATCTAACATATACCTTGTGTTTGAGTACATGGAACATGACATCACAGGCCTCTTGTCCAGCCGTGATGTCAAATTTAGTGAATCACAGATTAAATGCTACATGAAACAACTGTTGTCTGGGCTTGATCATTGTCATTCTCGTGGTGTGATGCATAGAGATATCAAAGGATCAAATCTTCTGGTGAACAATGAAGGGATACTAAAGGTTGCTGATTTTGGATTGGCAAAATTCTCTGTTTCTGGGAACAAACAGCCCCTTACCAGCCGTGTTGTCACTTTGTGGTACCGGCCTCCTGAACTTTTGCTGGGTTCCACAGATTATGGTCCCTCTGTGGATCTATGGAGTGTTGGCTGTGTTTTTGCAGAACTTATTGTTAGAAAGCCAATTCTTCAGGGGAGAACAGAGGTGGAACAATTGCACAAAATTTTCAAACTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACCAAGCTTCCTCATGCAACTCTGTTTAAGCCACAGCATACATACAATAGTTGCCTCCAAGAGACCTTTAAAGATTTCCCCATAACTACTGTGAATCTTCTTCAAACTCTTCTTTCCATCGAATCATACAAGCGTGGAACTGCTTCATCTGCTCTTTCATCACAGTATTTCAAGATAAAGCCTTATGCATGCGAACCGTCGAGCTTGCCTGTATACTCGCCCAGCAAGGAGATTGATGTAAAACACTGGGAGGAGTCAAGAAGAAAAAAGATCGGTGGAAGAGCTCGTGGACCCGAAACAAGAAAAACATCAAGAAAGCCACCAGGACTCAGTAAACTAGCCCCAGCTGAGAGTTTGATGAATCAAACTCGAAATTTGCAAGGCATCAATTGTAGAACTTCCAGCATCCTAAAAGAGAACACCAATATAAGTGAGGAGGTGCCAAAGCCATCAACTGATAGAGTCTCAGAAGATGCTTCCCATATTAAAAATCCATCTCATGGAGATATTCCCATATTACAAGTTTCAACTTCAAGTGGCTTTGCATGGGCGAAGAGGCGTAAAGATGACACTTCACGAAGATCTCATTGTCGATCTATTTCGAGGGGACATATTTCGAATTCTTCAGACCATTCTTCACTACATTCTTCAAGAAACAACTTTGACAGCAGAAACCAGGAAAATAATAAGGAATTCTGCTACTCAAGGGGCCACGACATAAGCGAAATCTCTAAGCTGGCAATGTTGAACCAATGGGGCAAGTTTGACCGCCCAGATTCATTTGATGCTTCTGATGAATACCACTCACAAGAGCTATCTATAGCCCTTTATCACAGAGAATATTCAGCATCAAGGAGAAGTAAAATGGATTCTGGAGAGAAGGTAGAATTTTCAGGACCACTTTTATCTCAAATGCACGCGGTCGATGAGCTCTTAGAAAGACATGAGCGTCACATTCGCCGTACAGTACGAAGATCTTGGTTTCAGAAAGGTAAGAAGCATGAGAAGAAAATGGAAGACTAA 2037 0.4413 MGCVYSRQPVSVTPAIDHSDLFRGNGGLGYSGRSLGELDGKKKKKKKKSDLVGESERESSNWGCDESLSFRLGNLQKYVEGEQVAAGWPAWLTAVASEAIHGWVPLRADAFEKLEKIGQGTYSSVFRAKELGTGKIVALKKVRFDIFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSSNIYLVFEYMEHDITGLLSSRDVKFSESQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLAKFSVSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELIVRKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQHTYNSCLQETFKDFPITTVNLLQTLLSIESYKRGTASSALSSQYFKIKPYACEPSSLPVYSPSKEIDVKHWEESRRKKIGGRARGPETRKTSRKPPGLSKLAPAESLMNQTRNLQGINCRTSSILKENTNISEEVPKPSTDRVSEDASHIKNPSHGDIPILQVSTSSGFAWAKRRKDDTSRRSHCRSISRGHISNSSDHSSLHSSRNNFDSRNQENNKEFCYSRGHDISEISKLAMLNQWGKFDRPDSFDASDEYHSQELSIALYHREYSASRRSKMDSGEKVEFSGPLLSQMHAVDELLERHERHIRRTVRRSWFQKGKKHEKKMED 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0816 678 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Lele20g0816 678 MobiDBLite consensus disorder prediction 539 563 - -
Lele20g0816 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lele20g0816 678 MobiDBLite consensus disorder prediction 420 444 - -
Lele20g0816 678 PANTHER CELL DIVISION PROTEIN KINASE 109 399 - -
Lele20g0816 678 CDD STKc_CDK9_like 111 395 - -
Lele20g0816 678 SUPERFAMILY Protein kinase-like (PK-like) 104 396 IPR011009 -
Lele20g0816 678 MobiDBLite consensus disorder prediction 478 563 - -
Lele20g0816 678 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0816 678 MobiDBLite consensus disorder prediction 488 502 - -
Lele20g0816 678 MobiDBLite consensus disorder prediction 39 62 - -
Lele20g0816 678 MobiDBLite consensus disorder prediction 521 535 - -
Lele20g0816 678 FunFam probable serine/threonine-protein kinase At1g54610 194 434 - -
Lele20g0816 678 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele20g0816 678 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Lele20g0816 678 FunFam probable serine/threonine-protein kinase At1g54610 98 193 - -
Lele20g0816 678 MobiDBLite consensus disorder prediction 420 451 - -
Lele20g0816 678 Gene3D Transferase(Phosphotransferase) domain 1 194 433 - -
Lele20g0816 678 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0816 Lele-ChrLele20 14896926 14900399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0816 103 427 Core Cell Cycle Gene Families AT5G10270 48.974 2.10e-105 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele20g0816 Pkinase 1.6e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0926 17 20341262 20344926 Lele20g0816 20 14896926 14900399 hybridization
Lele18g0603 18 3598309 3605914 Lele20g0816 20 14896926 14900399 hybridization