Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0807 ATGGTACTCACGGAAGAACAGAGAAAACAAGCCGAAGCTAATCGGTTAGCGGCCATCGAAAGACGAAAGGCAGTGCTAGAAGCTCGTGGAGAGAAAGACCCTTGGCAGCTGTTCAAGTGCCGTAAGATCTCTTCCAAATCGATTGCCAAGCCCACACCCACCGTTCACCCCCACCAGCAACACCACTCCGTCTCCGTCGAGCCAGTTTCTGCCGCACATTTGCCCCATAAATTTTTGGTTAGGCTTGAAATATGCTCTTCCGATTCCTTCTCTGCAACTCCTCTTCCCCTTCGGGGTTCCCCCTATCCCGGAGAAGAATGGTGCTTGCAGAGACTGAGTGATCATTTGTCCAATGTCATGCCTTCACACTACACCCAGAATCATGATGGCAGAAACGCCTGTGTATTTAACTTGAGGGATTACCGTACTGTCCTTAAATGTTTGAAGATTGCCACGGTCATAGAAGTTGAAGAAATTCCACGGGAAACTTTGATAGCCGTTCAAGCATTTTCGCATGTCTCTGGTACGGAGCGCTGGATACCCTGCAGGCCCGAGCATTTGTCTGATGAGAAGGTTGATGAGTTAATTGGGAAGCTACCAAGGACTCTGTTGGATGCACTGTTGCCTTTCCAAAGGGATGGTTTAAGATTTGGATTGAGAAGGGGTGGTCGGTGTCTTATTGCAGATGAGATGGGACTTGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGAATGAAGGTTCTATACTTGTTGTTTGTCCAGCTGTTTTGCGTTTTACATGGGCAGAAGAATTAGAGAGGTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCATCGAGATAATCCTGCTTATTTAACAAGATGCCCTAGAATTGTGGTTATTTCTTATACTATGCTCCATCGTCTGAGGAAGAGCATGCTTGAGCGAGAATGGGCTCTCTTGATTGTTGATGAATCCCATCACGTGCGATGTACGAGGAAGACCTCAGAACCAGGGGAGATAAATGCTGTTCTTGATGTTGCTTCAAAAGTCAAGCGAATAATACTGCTATCTGGGACACCTTCGTTGTCAAGGCCTGGACTGCTGGGAAAGAATAAATATGCGTTTGCTAAAACTTATTGTGATTGTAAATATATCAAGGGAACCCATGGAAAAGTTTATGCGGATTTTTCAAAGGGTATTCGCTTGGAAGAGTTGAACGTGTTACTCAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGCTGCTACAATTGCCACCAAAGCGGCGGCAAATTATAAGGTTGTTGTTGAAGAGATCAGATGTAGTTGCTGCAAAAACGGCAGTTGGAAAGTTGACTGTCAATACTTCCAAAAGTGACACCGAAGAAATGACTTTGGACAGTTTTGATGAGCCTGATGGGATGTTGAAGAGATCAGATGTAGTTGCTGCAGAAGCTGCAGTTGGGGTGTCAAATATTGATACTTCTGAAAGTGTCGATGAAGACGTATTGGAAAGTTTGGATGAATCTGAAGGGAAGCTTTCTTACCAGGAACTTGGAATTGCAAAGCTTTCTGGATTTCGTGAATGGCTTTCCCTCCATCCAGTCATTGCCGAGCCACAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGGGTGCAGGAGTTAGCTTGTGAGAAAGGGATTAGTTTTGTCCGAATTGATGGAAACACACTTGCTAGGGATAGGCAGTCAGCAGTGGTGTCATTTCGTTCAAGACCCGAGGTTAAAATTGCAATAATGGGTATTTTAGCAGCAGGATTTGGACTTGATTTCTCAGCAGCACAAGATGTCGTGTTCTTGGAGCTTCCTCAGTGCCCAACCCAGATGCTTCAGGCTGAGGATAGAGCTCATCGACGAGGGCAAACAAATGCAGTCAATGTATATATCTTTAATGCAAAGGATACTTGGGATGAGTCGCATTGGAAAAATCTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGTAAATATGATGCGATGAAAGAGATACAGGTTGAAGGTGTTTCTTACTTGGACACATTCTTCAAAACCAATAGAAGCTATGAAGAGCAATCTGCATCTGACGAAACTTCTGAACAGATGACCACGCTGCCAGATTTTGCCTCAGTTTCAAATTTGCAACCTTCCCAAGCAAATTCTAAGGAATCAGAAGCAAAATTGGGTGAACAAGCTGATAAACAGACTTGCTTTGCTGACAAGGTTTCCTGCCCAGAATCAGGCGAGGCTTCTATTTTGGATGTAAATTTAGATGTAGATATTTTTTACACTGAGGAAAAATGCTCTGGTTTTGACATGAGTAAGCTGGACAAGAGTTATGAAAGCAAAGATCAGATGATAGAATTTATTCAGAACAATTTTGAAGATGATAATCAACTAGAAGAGAATAAAAAATCATCAACTATAAAAGCAGATGACTACCAACCAGTTCAGCCAATTGAAGCTGAAGAAAGTTCCTCTCCTCACGTTGAATCTCTACGATTTGAGGCAAATACAAGACCAAGACCGCTTTGTAAGAATTTCCGACCAGAAGAACTTGAGTTGCTCAGTTCCCTTTCTGACGATGACAAAAAGAAAAATGAGATTTCTACCGGGGACAATCCTGCTTTTACAAATGCTCTTTTGGAATTTTTAAATGAATGGAAGAAATTAAGGCCAATTGAGCGAAAGAAGTTACTAGGAAAGCCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTGAGTGAAACTAGTAGCCACAACAAGAAGGGATTATTAAATGGTGGAAGCAAACGGCGCATGACTCCTTTAGTGGAGATAAGCCATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTCTATCTGCGAAGTGGCAATGGTAAGAAGGAGAAAGAATACACTCAAGGTTGGACTACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGATATGCATGGGTAACAATGCCAAGACCCCGGAATATTTTGAAGATCTTTTCTGTAACCTAGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAAATTCCTTCGTCAGGCAAGAACTTGTTTGTGCTTGAAGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCTTGGCATGCTGATCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGTCGACTGGAGAATATGAGGACCCTTTGCGTGGCCTGCCATTATGATGTTACAACAGCACAGTGTGCTGAACGACGCAAAGAGAGAGTCAAGGCAAAGAAACAGCTAAAATTAGTAATGTGTGAGTTAAAAGCAGGTCAAACAAAGGTCGCCACAGGTTCTAATATTAAGGAGCGGGGTCTTCTTGAGGGACAAGAGGATGGAAATGATGATGAGCTCATTGTCAAGGTTCCTGGAAGTGCTTATTCGGTAGCCAATGGCTAA 3483 0.4295 MVLTEEQRKQAEANRLAAIERRKAVLEARGEKDPWQLFKCRKISSKSIAKPTPTVHPHQQHHSVSVEPVSAAHLPHKFLVRLEICSSDSFSATPLPLRGSPYPGEEWCLQRLSDHLSNVMPSHYTQNHDGRNACVFNLRDYRTVLKCLKIATVIEVEEIPRETLIAVQAFSHVSGTERWIPCRPEHLSDEKVDELIGKLPRTLLDALLPFQRDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLNEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHRDNPAYLTRCPRIVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTRKTSEPGEINAVLDVASKVKRIILLSGTPSLSRPGLLGKNKYAFAKTYCDCKYIKGTHGKVYADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDVVAAKTAVGKLTVNTSKSDTEEMTLDSFDEPDGMLKRSDVVAAEAAVGVSNIDTSESVDEDVLESLDESEGKLSYQELGIAKLSGFREWLSLHPVIAEPQNASKMIIFAHHHKVLDGVQELACEKGISFVRIDGNTLARDRQSAVVSFRSRPEVKIAIMGILAAGFGLDFSAAQDVVFLELPQCPTQMLQAEDRAHRRGQTNAVNVYIFNAKDTWDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDTFFKTNRSYEEQSASDETSEQMTTLPDFASVSNLQPSQANSKESEAKLGEQADKQTCFADKVSCPESGEASILDVNLDVDIFYTEEKCSGFDMSKLDKSYESKDQMIEFIQNNFEDDNQLEENKKSSTIKADDYQPVQPIEAEESSSPHVESLRFEANTRPRPLCKNFRPEELELLSSLSDDDKKKNEISTGDNPAFTNALLEFLNEWKKLRPIERKKLLGKPLQLPLAVELCYLSETSSHNKKGLLNGGSKRRMTPLVEISHPLPSDAVWRKVYLRSGNGKKEKEYTQGWTTDEPLCKLCQKICMGNNAKTPEYFEDLFCNLVCYEEYRMRTSNKFLRQARTCLCLKLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTTAQCAERRKERVKAKKQLKLVMCELKAGQTKVATGSNIKERGLLEGQEDGNDDELIVKVPGSAYSVANG 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0807 1160 SMART HNH_5 1029 1088 IPR003615 -
Lele20g0807 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 380 IPR014001 -
Lele20g0807 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 689 IPR001650 -
Lele20g0807 1160 Gene3D - 205 370 IPR038718 -
Lele20g0807 1160 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1108 - -
Lele20g0807 1160 Pfam HNH endonuclease 1050 1088 IPR002711 GO:0003676|GO:0004519
Lele20g0807 1160 SMART ultradead3 203 388 IPR014001 -
Lele20g0807 1160 CDD SF2_C_SNF 548 653 - -
Lele20g0807 1160 CDD HNHc 1051 1091 IPR003615 -
Lele20g0807 1160 Pfam SNF2-related domain 225 464 IPR000330 GO:0005524|GO:0140658
Lele20g0807 1160 Coils Coil 9 29 - -
Lele20g0807 1160 Gene3D - 427 740 IPR027417 -
Lele20g0807 1160 SMART helicmild6 560 643 IPR001650 -
Lele20g0807 1160 Pfam Helicase conserved C-terminal domain 543 643 IPR001650 -
Lele20g0807 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 419 IPR027417 -
Lele20g0807 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 695 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0807 Lele-ChrLele20 14832354 14842745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0807 548 696 RAD5 or RAD16-like Gene Family AT1G11100 35.762 5.41e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele20g0807 SNF2_N 5.2e-20 CL0023