Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0802 ATGCACCCTTCGTCTCATACTCCTCACTTCTCTCGGCAACCCTATCCTTCAGAATCATTCTTATTAACGTTTCCTCAACCAACGATTACCTCCGTGCCACCGAATTCCTCTCTTCATCCTCCTGGATCCGACCCACTAGGAAGTTCGGCCTTATACGCGTTGTTCCTCTCTGCTTATGGGCACCGATCAATTAATTCACTGGACGCAAATGCTGATACTCTGAACTGGATCGTCAAACAAGTTCGATCCATAAGACATGAAGCTGCTGCCAAAGTCTCTCTTGGGACTTCAGCTGTGTCCGCAGGTTTTCCTTCTGCGTGGAATGACACCTTGGTGCGTCAACTTTTGCCAAACCAAACCAAAGCTCATGAACCAATGCGATGTGAGGTTTGCAAAATTGATTGCACAAGCAAAGATGTTTTTGAAAAGCACGTATCAGGAAAGGAGCACAAGGATATGCCGCTGCTAAATAACCCTACCAATACAATAATACGAGGAGCCTCTTATGCAAGTTTACAAAGTCAAATAAGTAGGGCCCGAGGACAAGATTTATTTGGTGTAGTGAGCAAAGAGTTAGAGTCTAAGAAACAGAAGCTTGTGAGTGGCGGTGCAGCAGTTGATTCAGTAAGGGTTTGCACGATATGTAATGTTGCTTGCAACAGTCAAGATGTATATAACAAACATCTATCTGGGAAAAAGAATGCTGCTCAGATTAGCTTGATGTCTGATAATGGGATTGGTCCTTATCTTGCCTCATTTAACCGTCATGGCACTGGTCCTTCGAAAAAAGGCCCGAAGAAAATTAAGTTTACCCAACCTGCATGGTGTGAACTTTGCAAGATCTGTTGTAACAGCAGGGATGTATATATGACACACTTAGCAGGGAAGAAACACCTGAGGAACCTGGAGTTGCTGTCAAAATCAAATAATGCTTTGCAACGTGCAACTAATCAAGTTATTGGACCCCAGGAAAAGCCAAACACTTGTAAAGATGAAGGGATAATAAATTCACATGAGCCAAATAAAGCAGCCATGGTAGAGGATATTGAGGCAAAGAAACGTAAACTTGTGAAAGGTGGGGCTGCAGAAACTGATATTAGAACATGCACTCTATGTAAAGTGGTATGCAACAGCCAAACGGTGTTTTATTTTCGCCTTACTGGGCAGAAACATGCTGCGACAATGGTGAAGCTGAAGCAGAATCAGGCAGGTACAAAGTTAGGATCTTGGATTAGAAGATGCCTTGACTTTGTGATTAGAAGCAAATCCTACACGAGGAAAGGCAAAGCTTACGCTGCAGATGGATTTGAATGATTGCTTACGGAAATGTCAAATAGCTTCAGAAGTGACATCGATATTTCTTTTAATGCGGAGGAACTCTTGAAGGTTAAAACAAGGTGTAGAGAGCTAGTAGAACTACATGAGAAGTCATTATCAGAGGCTAGCATAAAAGATAAGAAACACGTACAAAGGTTGGAAGAAGAGCTGTTGAACTGCTCTCAAGAAATAGATTACCTTAAGGATCAGCTTAATGGAAGGAACATGGAGGTGAAATACCTGCAAGAGCTTGTTTACAGCCTCAAATTGAAAATAAAGGATATGGAAGGCTTACAAGATGAGGTTTTCAGGTTAAAGGAGGAGCTGCAGAAATCCAATTCTGAGCAATTTTTCTTGTTGAAGGAATTAGAGACTAAAGAAATGGAATTGGAGAAGTCAACACTGTCCGTAGAGAAATTGGAGGAATCAATTTCATCCATGGCATTAGAGTCTGAATGTGAAGTAGAGTGTGTGAAGCTTGACATGATGGCCTTGGAACAGAGTCATTTTGAGGCTAAGAAAACACAGGAGGAAGCTCTAGAGGAAAACACTAGAATGAGTAGATTGATTGAAGAGCTTCAGTATAAATTTCAAGAAGCCCAAAAAAATATTGTCTCTCTAAATGAGGAAAACAGGAAACTTAAGAATAAGATTGTTGTAGTCAACATGAACACTAAAAATTTTTCTCAGAAGGTTGAAGAGTGGCTAGAAAACAAGGACAGATCACAACCCAATGGTCAGTCTTCCTTGAGCGAACAAGAGAAGGATTCAGACATATCAAAGGATATAAGTGTTTATGGAGAAGTATTGGGTCCACTCCTTGGAAGGCTATCATTGGCGTTGGAAACAGATGTAGGTATTAAAGAGGAGATGGGGAAGATGTCATATCAGATGCAAAAGTATAAAATAATTGTGGACAAACTTAAGGAAGAATTGAGAGAAGAAAAGTTGAATGCCAAAGAAGAAGCAGAGGACCTTGCTCAAGAAATGGCAGAGCTTAGATATCAAGTTACAGGTTTGTTAGAAGAAGAATGTAAGCATCGTGCTCGCATCGAACAGGCTTCTTTGCAAAGAATTGCCGAGTTAGAAGCACAGCTTCAAAGAGAACAGAGAAAATCTTTATTTGCTGTCAGCCTCCCAGAAATGTAG 2466 0.4096 MHPSSHTPHFSRQPYPSESFLLTFPQPTITSVPPNSSLHPPGSDPLGSSALYALFLSAYGHRSINSLDANADTLNWIVKQVRSIRHEAAAKVSLGTSAVSAGFPSAWNDTLVRQLLPNQTKAHEPMRCEVCKIDCTSKDVFEKHVSGKEHKDMPLLNNPTNTIIRGASYASLQSQISRARGQDLFGVVSKELESKKQKLVSGGAAVDSVRVCTICNVACNSQDVYNKHLSGKKNAAQISLMSDNGIGPYLASFNRHGTGPSKKGPKKIKFTQPAWCELCKICCNSRDVYMTHLAGKKHLRNLELLSKSNNALQRATNQVIGPQEKPNTCKDEGIINSHEPNKAAMVEDIEAKKRKLVKGGAAETDIRTCTLCKVVCNSQTVFYFRLTGQKHAATMVKLKQNQAGTKLGSWIRRCLDFVIRSKSYTRKGKAYAADGFEXLLTEMSNSFRSDIDISFNAEELLKVKTRCRELVELHEKSLSEASIKDKKHVQRLEEELLNCSQEIDYLKDQLNGRNMEVKYLQELVYSLKLKIKDMEGLQDEVFRLKEELQKSNSEQFFLLKELETKEMELEKSTLSVEKLEESISSMALESECEVECVKLDMMALEQSHFEAKKTQEEALEENTRMSRLIEELQYKFQEAQKNIVSLNEENRKLKNKIVVVNMNTKNFSQKVEEWLENKDRSQPNGQSSLSEQEKDSDISKDISVYGEVLGPLLGRLSLALETDVGIKEEMGKMSYQMQKYKIIVDKLKEELREEKLNAKEEAEDLAQEMAELRYQVTGLLEEECKHRARIEQASLQRIAELEAQLQREQRKSLFAVSLPEM 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0802 821 SMART ZnF_U1_5 123 157 IPR003604 GO:0003676|GO:0008270
Lele20g0802 821 SMART ZnF_U1_5 364 398 IPR003604 GO:0003676|GO:0008270
Lele20g0802 821 SMART ZnF_U1_5 207 241 IPR003604 GO:0003676|GO:0008270
Lele20g0802 821 SMART ZnF_U1_5 271 305 IPR003604 GO:0003676|GO:0008270
Lele20g0802 821 Coils Coil 489 509 - -
Lele20g0802 821 SUPERFAMILY beta-beta-alpha zinc fingers 205 238 IPR036236 -
Lele20g0802 821 Pfam Zinc-finger of C2H2 type 212 233 - -
Lele20g0802 821 Pfam Zinc-finger of C2H2 type 128 150 - -
Lele20g0802 821 Pfam Zinc-finger of C2H2 type 275 298 - -
Lele20g0802 821 Coils Coil 527 554 - -
Lele20g0802 821 MobiDBLite consensus disorder prediction 1 20 - -
Lele20g0802 821 MobiDBLite consensus disorder prediction 675 695 - -
Lele20g0802 821 Coils Coil 791 811 - -
Lele20g0802 821 SUPERFAMILY beta-beta-alpha zinc fingers 119 153 IPR036236 -
Lele20g0802 821 SUPERFAMILY beta-beta-alpha zinc fingers 272 305 IPR036236 -
Lele20g0802 821 Gene3D Classic Zinc Finger 115 153 - -
Lele20g0802 821 Gene3D Classic Zinc Finger 187 240 - -
Lele20g0802 821 Gene3D Classic Zinc Finger 258 304 - -
Lele20g0802 821 Coils Coil 737 782 - -
Lele20g0802 821 Coils Coil 611 663 - -
Lele20g0802 821 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 443 816 - -
Lele20g0802 821 Coils Coil 562 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0802 Lele-ChrLele20 14805731 14812053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0802 201 407 C2H2 Transcription Factor Family AT5G61190 29.469 4.10e-18 87.8