Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0800 ATGATGCTAAGCAGAGACGTTGGTCAGTGGGGCGGTTTGAATTCTCTAGTTGAGTCCTCTGATAACAATTCTGCATATTTCGAAGCTCGATCTTATGTGGTTCGAACTCATCTGAGTAGCAAAATTGAAACAGGTAAAGTAAAACTGACAATTGGCAGCAACTCTGATTCTGCGAATTTGAACTCTAAACGGAAGAAACATGAGAGTTTAGCGATCAAAGCGATGAAAACAACAGTTTCCATTAATGGGTTGGTCAAGAACTGTAAAGAAAAGAAGCATCATCGTGAGCAGCTTGATAACCAGTCTACATTGGAGGATTCTGAAGACGAAGAAGAGTGGAAGAGTGAACACAATGGAACAGAACTAGATTCATCAGTAAAGAGAAGGTTTTCAGAATCTGAGGTGAAGTCATCAAATAATTGCAAGAAAGGGAAGTTCAAGTGTACTACTTGCAACAAGATCTTCCATTCGTACCAAGCTCTGGGAGGCCATAGATCTAGTCATAAGAAGCTCAAAGGCTGCTCTGCTTCAAGAAACGAGAGCAGCGAAAACAGCATAGAAACGGACCTTAACAATGGCTATGCAATCGAGAAACAAGAGCTTATTACTGGTTCTGTTAATTTTGAGAAGGAGGAAGAGATAATCACAGAACCCAATAAGAAGAACAAAGAACACGAGTGTCCAATTTGCCTCAAGATTTTCCCATCTGGGCAAGCTTTGGGTGGTCACAAGAGATCTCATTCCACTTCTGAAGGATCACTAGTCCTTGAGAAACCAGTTCAGGAAATCAGAGACTTTCTTGATCTCAATCTTCCAGCTTCTGCAGAAGAAGAAAGCAACAGTCAATTAATGGAGAATTACCCACCACCATGGTGGGTTGCCAAGCAAGAGGCGGCACTGGTTGGCCTCATATCTAACTGA 921 0.418 MMLSRDVGQWGGLNSLVESSDNNSAYFEARSYVVRTHLSSKIETGKVKLTIGSNSDSANLNSKRKKHESLAIKAMKTTVSINGLVKNCKEKKHHREQLDNQSTLEDSEDEEEWKSEHNGTELDSSVKRRFSESEVKSSNNCKKGKFKCTTCNKIFHSYQALGGHRSSHKKLKGCSASRNESSENSIETDLNNGYAIEKQELITGSVNFEKEEEIITEPNKKNKEHECPICLKIFPSGQALGGHKRSHSTSEGSLVLEKPVQEIRDFLDLNLPASAEEESNSQLMENYPPPWWVAKQEAALVGLISN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0800 306 MobiDBLite consensus disorder prediction 89 129 - -
Lele20g0800 306 Gene3D Classic Zinc Finger 143 247 - -
Lele20g0800 306 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 281 - -
Lele20g0800 306 Pfam C2H2-type zinc finger 225 248 - -
Lele20g0800 306 Pfam C2H2-type zinc finger 146 170 - -
Lele20g0800 306 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Lele20g0800 306 MobiDBLite consensus disorder prediction 113 129 - -
Lele20g0800 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Lele20g0800 306 SUPERFAMILY beta-beta-alpha zinc fingers 146 247 IPR036236 -
Lele20g0800 306 SMART c2h2final6 225 247 IPR013087 -
Lele20g0800 306 SMART c2h2final6 146 168 IPR013087 -
Lele20g0800 306 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Lele20g0800 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0800 Lele-ChrLele20 14799248 14800168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0800 143 287 C2H2 Transcription Factor Family AT2G45120 38.312 1.23e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele20g0800 zf-C2H2_6 8.1e-11 CL0361