Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0789 ATGGTATTCTACAAATCGCATGGAAAGATGCTGGCCCTTTTGCAGTGGCTTCAGCGGTTCATGAAATTTATTTTGGGTTTTGTTTGGAAGTTTGCTTGGGGAGCTATTGCTGGGGCGTTTGGGGAAGGAATGATTCATCCAGTGGATACCATTAAAACGCGAATGCAAAGTCAAGCAATTATTGATGGAATTCAGGGGTTACTGGGTCTCTTGCTACTGGTGCGACATATTTTGGTGTCAGAGTCCACTAAAAGGTGGATTGAGGACACACACCCTCGTCTTGGTGGCCACTGGGCACATTTCATTGCCGGAGCTGTTGGAGATACACTTGGTTCTTTTGTGTATGTTCCATGTGAAGTGATAAAGCTACGCATGCAGGTTCAAGGCACAACCTCATCTTGGAATTCTTTCATTATGAAAGATAGCATTGCAATGAAGCCTACCACTCAAATATATGGTTACTATACAGGAATGTTTCATGCTGGTTGCTCGATATGGAAAGCGCAGGGCTCAAGGGGTTTGTATGCAGGATACTGGTCTACACTGGCAAGGGATGTCCCATTTGCTGGACTGATGGTCATGTTTTACGAAGCTATGAAAGATGTGACAGAATATGGAAAGCAAAGATGGATATCAAGCTCGAATTGGCATGTTAACAGTTCTTTAGAGGGACTTGTGTTTGGAGGCTTAGCTGGTGGTCTTAGTGCTTATCTCACAACTCCCTTGGATGTGATCAAAACAAGATTGCAAGTTCAGGGTTCAGCCATAAGTGGTTGGTTTGACGCGATCCGGAACATATGGACTATGGAAGGCACGAAGGGGATGTTTAAGGGTAGCATCCCTAGGATTACATGGTACATTCCTGCTTCTGCGCTTACATTTATGGCTGTGGAATTTCTCAGAGATCATTTTAGTGAAAGAGATGCATGTGAAAATTATCAAGACGTTGCTGCATTATCAGTGGACAAGAATAAATCTTCTGTACGAGAGGTTGGGCGCGGAAGGAATCCCATCTGGGAACCTGAAACGACTTCTTCAGTTGTGAGCTCCGTCTTTGGGGCCAACCTTGTGAGGGACAGCTACGTTGAAAGATATTCTGTGGCATCGGGAAATCGATGCCATTATGAGGTCCTCGGTCTCGAACGAGACTGTACCGTCGACGAGATACGGTCGGCGTACCGGCGTCTTGCCCTTCTGTGCCATCCTGACAAGCTTGCGAAATCCGGCTTATCTCAAGCCGAAGCCACATCTCTATTCCAGGAGCTCCAACGTGCCTACACCATCCTTTCCGACCCGAAAGATCGAGCGTGGTACGATTCCCTGCGATCTAATATTCTCTATTCTGATCCCAATTCAGTACGAAACTCGGCCTCCAACTCGTTCACCCCGGACTTGTCTTCCTTCTTCTCTGGCGGTGTTTATTCTGGGTATTCGGACACCGGCAAGGGGTTCTATAAGGTCTATGCCGACGTTTTTGGTAAAATTCATGCCAACGAAATTAACTTCGTGAAGAAATTAGGGCTTGGTATTGATGTGGTTCAATCATCACCAGTAATGGGAAATTTGGATAGCCCTTATGCCCAAGCTTCAGCTTTCTACAATTACTGGTTGGGATTTTCTACGGTTCTGGATTTTTCCTGGATGGACGCGTATGATATTGTCATGGCTAGTCCCAACAGGAAGTCGAGGCGGCTTATGGAGGAAGAGAACAAGAAGATCAGAAAGAAGGCAAAGAAAGAGTACAATGACACTGTGCGGAAGTTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATCGATATGAAGGTGAAGAAGGAAATGGAGGTGGAAAAGAAGAAATAG 1845 0.4575 MVFYKSHGKMLALLQWLQRFMKFILGFVWKFAWGAIAGAFGEGMIHPVDTIKTRMQSQAIIDGIQGLLGLLLLVRHILVSESTKRWIEDTHPRLGGHWAHFIAGAVGDTLGSFVYVPCEVIKLRMQVQGTTSSWNSFIMKDSIAMKPTTQIYGYYTGMFHAGCSIWKAQGSRGLYAGYWSTLARDVPFAGLMVMFYEAMKDVTEYGKQRWISSSNWHVNSSLEGLVFGGLAGGLSAYLTTPLDVIKTRLQVQGSAISGWFDAIRNIWTMEGTKGMFKGSIPRITWYIPASALTFMAVEFLRDHFSERDACENYQDVAALSVDKNKSSVREVGRGRNPIWEPETTSSVVSSVFGANLVRDSYVERYSVASGNRCHYEVLGLERDCTVDEIRSAYRRLALLCHPDKLAKSGLSQAEATSLFQELQRAYTILSDPKDRAWYDSLRSNILYSDPNSVRNSASNSFTPDLSSFFSGGVYSGYSDTGKGFYKVYADVFGKIHANEINFVKKLGLGIDVVQSSPVMGNLDSPYAQASAFYNYWLGFSTVLDFSWMDAYDIVMASPNRKSRRLMEEENKKIRKKAKKEYNDTVRKLAEFVKKRDKRVIDMKVKKEMEVEKKK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0789 614 Pfam Mitochondrial carrier protein 27 59 IPR018108 -
Lele20g0789 614 Pfam Mitochondrial carrier protein 97 202 IPR018108 -
Lele20g0789 614 Pfam Mitochondrial carrier protein 222 306 IPR018108 -
Lele20g0789 614 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 303 IPR018108 -
Lele20g0789 614 ProSiteProfiles Solute carrier (Solcar) repeat profile. 95 202 IPR018108 -
Lele20g0789 614 ProSiteProfiles dnaJ domain profile. 373 442 IPR001623 -
Lele20g0789 614 Gene3D DnaJ domain 360 463 IPR036869 -
Lele20g0789 614 SMART dnaj_3 372 434 IPR001623 -
Lele20g0789 614 Pfam DnaJ domain 374 439 IPR001623 -
Lele20g0789 614 CDD DnaJ 373 431 IPR001623 -
Lele20g0789 614 Gene3D Mitochondrial carrier domain 8 77 IPR023395 -
Lele20g0789 614 Coils Coil 563 583 - -
Lele20g0789 614 SUPERFAMILY Mitochondrial carrier 26 300 IPR023395 -
Lele20g0789 614 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 368 614 IPR044648 -
Lele20g0789 614 PRINTS DnaJ domain signature 393 408 IPR001623 -
Lele20g0789 614 PRINTS DnaJ domain signature 375 393 IPR001623 -
Lele20g0789 614 PRINTS DnaJ domain signature 414 434 IPR001623 -
Lele20g0789 614 Gene3D Mitochondrial carrier domain 78 317 IPR023395 -
Lele20g0789 614 FunFam Mitochondrial substrate carrier family protein 143 320 - -
Lele20g0789 614 SUPERFAMILY Chaperone J-domain 365 444 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0789 Lele-ChrLele20 14736051 14741182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0789 366 606 C2H2 Transcription Factor Family AT1G74250 68.595 2.12e-107 335